Muscardinus avellanarius (hazel dormouse): 308273013
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Entry
308273013 CDS
T11987
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308273013 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308273013 (SKIC2)
Enzymes [BR:
mave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308273013 (SKIC2)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308273013 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308273013 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
308273013
NCBI-ProteinID:
XP_080566228
LinkDB
All DBs
Position
14:<88959876..>88975129
Genome browser
AA seq
1246 aa
AA seq
DB search
MLETERLVLPSPDPLNLPLRAVEVGCTGRWELLNVPGTAESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSTRKWQRKTDPWSLLVALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTDLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPTLTDLGARDEAEEEVDFE
KDLLTVPPGFKKGVDFAPKDHPPPAPGLLSLSRLLEPLDLGGGDEDESEAGGQPGGPRGD
TASASPCSTPLARASSLEDLVLEKASAVIAPLEPPRPSPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERASKHTQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQAAGLTSLDLTTGSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGSLEEPDVTGQLVDLPEYYSWGEELTETRGMIQQRIVESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPASGDPQDRRPAAPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITSKMLRVNGEKILEDFSRRQQPKFRKDPPLAA
VTTAVQELLRLAQAYPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIREAQCVHSPRF
SAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDQAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSSGDAGDQLPSTLKQGVERVKA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaccgagcgactcgtgctgccttccccagaccctctcaacttgcctcttcgg
gctgtggaagtgggatgcaccgggcgctgggagctgctgaatgtgcctgggactgccgag
agcacccttccccatggcctcccaccctgtgccccagacctgcaacaagaggcagagcag
ctgtttctgtcctccccagcctggctgcctctgcacggtgtggaacactccacccgaaaa
tggcagaggaagacagatccctggtctctcctggttgccctgggagcgccagtcccttcc
gaccttcaggcccaaagacacccaaccacaggccagatactgggctacaaggaggtcctg
ctggagaacacagacctgtcggccacaacctccttgtctcttcgccggcccccagggcca
gcctcccagtctctgtgggggaacccaacacagtaccctttctggccaggtgggatggat
gagcctactctaacagatctgggagctcgggatgaggccgaggaagaggtagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggcgtggactttgcccccaaggat
cacccacctcctgctcctggactgctcagcctcagccgtctgctggagccgctagatttg
ggcgggggtgatgaggacgagagtgaggccgggggacagcctggaggccccaggggggac
actgcttcagcctctccctgcagcactcccctggctcgagcaagcagcctagaggaccta
gtgctggagaaagcatccgcagtcatagccccgctggagcctcccagaccttcacctcag
gagcagtgggccattcctgtggacgtcacctcccccgttggtgacttctaccgcctcatt
ccccagcctgccttccagtgggcatttgagccagacgtgtttcagaaacaggccatcctg
cacttggaacagcacgactccgtctttgtcgcggctcacacgtctgcggggaagacagtt
gtggctgaatacgccatcgccctggcccagaaacacatgacacgcaccatctacacctca
cccatcaaggccctgagcaatcagaagttccgggacttccgaaacacgtttggggacgtg
gggctgctcacgggggacgtgcagctgcacccggaggcgtcctgcctcatcatgaccacg
gagatccttcggtccatgctgtacagcggctcggatgtcatccgggacctggagtgggtc
atctttgatgaggtccactacatcaacgatgccgagcgtggggtcgtgtgggaggaggtc
ctcatcatgctccctgaccacgtctccatcatcctgctgagtgccaccgtccccaacgcc
ctggagtttgccgactggattgggcgactcaagcgtcgccagatctacgtgatcagcacc
gtcgcccgccccgtgcccctggagcactacctcttcacggggaacagccccaagacccag
ggggagctcttcctgctgctggactcccgcggggccttccacaccaaggggtactacgca
gccgtggaggccaagaaggagagagccagcaaacacacccagacctttggggccaagcag
cccacacaccaggggggccccgctcaggaccgcggggtctacttgtcccttctggcctcg
ctccgcgcgcgggcccagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggccgcgggcctcacctcgctggacctcaccacgggctcagagaagagcgagatc
catctcttccttcagcgctgcctggcccgcctccggggctctgaccgccagctgccacag
gtcctgcacatgtctgagctcctgcaccgcggcctgggcgtgcaccacagtggcatcctg
cccatcctcaaggagatcgtggagatgctgttcagccggggcctggtcaaggtcttattt
gccacggagacctttgccatgggtgtcaacatgccggcgcggaccgtggtgtttgactcc
atgcgcaaacatgacggctccaccttccgggacctgctccccggggagtacgtgcagatg
gctggccgggcaggccggaggggcctggaccccacaggcactgtcatcctgctgtgcaag
ggccgtgtgcctgagatggcggatctgcaccgcatgatgatggggaagccgtcccagctg
cagtcccagttccggctcacgtacaccatgatcctcaacctgctccgggtggacgccctc
agggtggaggacatgatgaagaggagcttctctgagttcccatcccgcaaggacagcaag
gcccacgagcaggctctggctgagctgaccaagcggctggggtccctggaggagcccgac
gtgaccggccaactggtcgacctgcccgagtattacagctggggcgaggagctgacagag
acccgcggcatgatccagcaacgcatagtagagtctgtgaatgggctgaaatccctctcg
gccggaagggtggtggttgtgaagaatcaggagcatcacaacgcgttgggtgtgatcctg
caggtgtcctccaactccaccagcagagtcttcacaaccttggtcctgtgtgataagccc
gcgtccggggacccacaggaccggagaccagctgcaccagatgtgccctacccagatgac
ctcgtgggattcaagctgtttctgcctgaagggccctgtgaccacactgtggccaagctc
cagccgggagacgtggctgccatcaccagcaagatgctccgggtgaatggggagaagatc
ctggaggacttcagcaggaggcagcaaccgaagttcaggaaggaccctccccttgcagct
gtgaccactgctgtccaggaattgctgcgtctggcgcaagcctacccaacaggaccccct
accctagaccctgtcaacgacctgcagctcaaggatgtgtcggtggtggagggtgggctc
cgggcccgcaagctggaggagctgatccgggaggcccagtgtgtgcacagccctcgtttt
tccgctcagtacctgaagctgcgggagcggatgcagattcagaaggagatggagcggctg
cgcttcctgctgtccgatcagtccctactgctgcttcctgagtaccaccagcgcgtcgag
gtgctccgcaccctgggctacgtggaccaggcgggcaccgtgaagctggcagggagggtg
gcttgtgccatgagcagccacgagctgctcctcaccgaactcatgtttgacaatgcgctg
agcgccctgcggcccgaggagatcgcggccctgctctccggcctggtctgccagagctct
ggggacgctggggaccagctcccgagtaccctcaagcagggtgtggaacgcgtcaaggct
gtggccaagcggattggtgaggtgcaggtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaacttcggcctggttgaggtggtgtacgagtgggcgcggggcatg
cccttctctgagttggcagggctctcggggacccccgaaggcctggtggtccgctgcatc
cagcgtctggctgagatgtgccgctcgctgcgaggtgcagcccgcctggtaggggagcct
gtgctgggtgccaagatggagacggcggccaccctgctgcggcgggacatcgtcttcgca
gccagcctctacacccagtga
DBGET
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