Muscardinus avellanarius (hazel dormouse): 308273289
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Entry
308273289 CDS
T11987
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03013
Nucleocytoplasmic transport
mave03015
mRNA surveillance pathway
mave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308273289 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
308273289 (DDX39B)
03015 mRNA surveillance pathway
308273289 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308273289 (DDX39B)
03041 Spliceosome [BR:
mave03041
]
308273289 (DDX39B)
Enzymes [BR:
mave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308273289 (DDX39B)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
308273289 (DDX39B)
Spliceosome [BR:
mave03041
]
Complex C
Other components
EJC/TREX
308273289 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
308273289 (DDX39B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
308273289
NCBI-ProteinID:
XP_080566496
LinkDB
All DBs
Position
14:complement(<88486480..88500347)
Genome browser
AA seq
429 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYSESSGP
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgacgtggacaatgagctcttggactatgaagacgatgaggtggagacg
gcagctgggggcgatggggccgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccatccacagctctggctttcgggacttcctgttgaagccagagttgctccgggccatt
gtcgactgtggcttcgagcatccatcagaagtccagcacgagtgcatccctcaggccatt
ctgggaatggacgtgctatgccaggccaagtctggcatgggaaagacggcagtgtttgtg
ctggccacactgcagcagctggagccagttactggacaggtgtctgtgctggtcatgtgt
cacacgagggagttggcttttcagatcagcaaggaatatgagcgtttttctaagtacatg
cccaatgtcaaggtcgctgtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
cgcaataagagcctcaacctcaaacacattaaacactttatcctggatgagtgtgataag
atgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctactttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtccgtgcagcggtgc
atcgccctggcccagctgctggtggagcagaacttcccagccatcgccatccaccgcggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
ctcgtggccaccaacctgtttggccgaggcatggacatcgagcgggtgaacatagccttt
aactatgacatgcccgaggactctgacacctacctgcaccgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgttcgtgtccgatgagaacgacgccaagatcctg
aatgacgtgcaggaccgctttgaggttaacatcagcgagttgcccgatgagatcgacatc
tcctcctacagtgagtcctccggcccctga
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