Muscardinus avellanarius (hazel dormouse): 308275749
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Entry
308275749 CDS
T11987
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mave
Muscardinus avellanarius (hazel dormouse)
Pathway
mave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308275749 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mave03041
]
308275749 (DDX42)
Enzymes [BR:
mave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308275749 (DDX42)
Spliceosome [BR:
mave03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308275749 (DDX42)
Complex B
308275749 (DDX42)
Complex C
U2 SnRNP specific factors
308275749 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
308275749
NCBI-ProteinID:
XP_080570228
LinkDB
All DBs
Position
16:58384248..>58438168
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AA seq
769 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKQADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggtcctggcactaagcggggatttggcttcggaggttttgcc
atcagtgctgggaagaaggaggaacccaaactcccacaacagtcccacagtgcctttggg
gcaactagttcttcctctggattcggaaagtcagctccacctcaacttccttctttctac
aaaattggatctaaacgggccaattttgatgaagaaaatgcgtattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgcggaaaactcacctacccgccaa
caatttcattccaagcaagcagattctgacagcgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagcgtcttgaagaaaaggacaaagaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatatatggcagaaaatccaactgctggcgtggttcaggaggaagaggaagacaat
ctggaatatgatagtgatggaaatccaattgcaccttccaaaaaaataattgatcctctt
cctcccattgatcattcagagattgactacccaccatttgaaaaaaatttttacaatgag
catgaggaaataaccaacctcactccgcagcagttaatagatctccggcataagctcaat
ctgcgggtctctggtgctgcacctcctagaccaggaagtagttttgcccattttgggttt
gatgaacagcttatgcaccagattcggaaatctgagtacacacagcccactccaattcag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtggaaagactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggagccaggtgatgggccaattgcagtgattgtgtgtcctactagggaactttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgctcagtggctgtg
tatggaggagggagcatgtgggagcaggccaaggctctccaggaaggggcagagattgtt
gtgtgtacccctggtcgactgattgatcatgtgaagaagaaagctactaatcttcaaaga
gtttcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccaa
gttcgatccatagcaagccatgtccgtcctgacagacagactctcctctttagcgccact
tttcggaaaaagattgaaaaattggccagagacatcttgattgaccctattcgagtggtc
cagggagatattggagaggcaaatgaagatgtgacacaaattgtggagattctccattcg
ggacctagtaaatggaactggcttacccggcgtctggtggagtttacttcttcagggagt
gtccttctgtttgttactaaaaaagccaatgctgaagagctagccaataatcttaagcag
gaagggcataatcttggactactccatggggacatggatcagagtgagagaaacaaggtc
atctcagactttaagaaaaaagacatcccagtactcgtggccacagatgttgcagcccgg
ggtctggacattccttcaatcaagactgtaattaactatgatgtagcacgagacattgat
acccatactcacaggattggccgcacaggaagagcgggtgagaagggtgtggcttatacc
ttactgacccccaaggacagcaattttgctggtgacctcgtccgaaacttggaaggagcc
aatcaacatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tctcgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcctaggctat
agggagcggcctggcctaggctccgagaacacggaccgaggaaataacaacaatgtaatg
agtaattatgaggcctacaagccttccacaggagccatgggagatcgtctaacagcaatg
aaagctgctttccagtcacagtataagagtcactttgttgcagccagcttaagtaatcag
aaggctggaagctctgctgctggggcaagtggatggactagtgctggcagcagcaagatg
gacaagatggacagcaagacagataagacagctgatggttttgctgtcccagaaccaccc
aaacgcaagaaaagccgttgggacagttag
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