Muscardinus avellanarius (hazel dormouse): 308275845
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Entry
308275845 CDS
T11987
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03030
DNA replication
mave03420
Nucleotide excision repair
mave03430
Mismatch repair
mave03440
Homologous recombination
mave03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
308275845 (RPA1)
03420 Nucleotide excision repair
308275845 (RPA1)
03430 Mismatch repair
308275845 (RPA1)
03440 Homologous recombination
308275845 (RPA1)
03460 Fanconi anemia pathway
308275845 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mave03000
]
308275845 (RPA1)
03032 DNA replication proteins [BR:
mave03032
]
308275845 (RPA1)
03400 DNA repair and recombination proteins [BR:
mave03400
]
308275845 (RPA1)
Transcription factors [BR:
mave03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
308275845 (RPA1)
DNA replication proteins [BR:
mave03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
308275845 (RPA1)
DNA repair and recombination proteins [BR:
mave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
308275845 (RPA1)
MMR (mismatch excision repair)
308275845 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
308275845 (RPA1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
IBR
DUF8512
Motif
Other DBs
NCBI-GeneID:
308275845
NCBI-ProteinID:
XP_080570340
LinkDB
All DBs
Position
16:complement(<22164577..>22239330)
Genome browser
AA seq
618 aa
AA seq
DB search
MVSHLSEGAISAIMQQGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLHTLSSFMLAT
QLNPLVEEGRLSSNCICQINRFIVNTLKDGRRVVILMDLEVLKSAEAVGLKIGNPVPYNE
GHGQQPQQVVPSPVSAANTLTSKPQQQNGSSGMGSTVSKAFGASKTFGKPGGTSLSHPSG
GTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSMELVDESGEIRATAF
NEQVDKFFSLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVMPCEDGHHLPTV
QFDFTGINDLENKPKDSLVDIIGICKSYEDATKITVKSNNREVAKRNIYLMDMSGKMVSA
TLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSILSSSTIIVNPDIPEAYKLRGWFDSE
GQALDGISISDLKSGGTGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENSMY
QACPTQDCNKKVIDQQNGLYRCEKCDSEFASFKYRMILSANIADFQENQWVTCFQESAEA
ILGQNAAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVD
YRDYGRRLIMNIRRNAMM
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtcagccacctgagcgagggggccatttcggctataatgcaacagggagatacaaac
ataaaacccattctccaagtcattaacatccgccccattactacagggaatagtccacct
cgttaccgactgcttatgagtgatggattgcacactctgtcatctttcatgttggcaaca
cagttgaaccctcttgttgaggaaggacgattgtctagcaattgtatttgccagattaac
cggtttattgttaacacactgaaagatggaaggagagtagttattttgatggatttagaa
gttttgaaatcagctgaagcagttggattaaagattggcaatccagtgccctataatgaa
ggacatgggcagcaaccacagcaagtcgttccttctccagtctcagcagccaatacacta
accagcaagccccagcaacagaatgggagctcaggaatgggttccactgtatctaaggct
tttggggcctcaaaaacattcggaaaacctggagggaccagcctttcacatccttctggg
ggaacgcagtccaaagtggtacccattgccagcctcaccccataccagtccaagtggact
atttgtgctcgagttaccaacaaaagccagatccgaacgtggagcaattctcgaggggaa
gggaagctcttttccatggaactagttgatgaaagtggtgaaatcagagctactgctttc
aatgaacaagtagacaagttcttctcccttattgaagtgaataaggtgtattatttctca
aaaggcaccctgaagattgctaacaaacaattctcagctgttaaaaacgactatgagatg
actttcaataatgagacttctgtaatgccctgtgaggatggacatcatttacctacagtt
cagtttgatttcacagggatcaatgacctagagaacaagccgaaagactcacttgtagac
atcattgggatctgcaagagctatgaagatgccactaagatcactgtaaagtctaacaac
agagaagttgctaagagaaatatttatttgatggacatgtctgggaaaatggtgtctgct
actctgtggggagaagatgctgacaggtttgatggttctagacagcctgtgatggcaatt
aaaggagccagagtttctgattttggtggacggagcctctccatactatcttcaagcact
atcattgtgaatcctgacatcccagaggcctataaacttcgtggatggtttgactcagag
ggacaggccttagatggtatttccatctctgatctaaagagtggaggaactggagggagc
aataccaactggaaaactttgtatgaggttaaatcggagaacctgggccagggcgacaag
gcagactattttagctctgtggcgacagtggtgtatcttcgcaaagagaactctatgtac
caggcttgcccaacgcaggattgcaataagaaagtgattgaccagcagaatggattatac
cgctgtgagaagtgtgacagtgaatttgccagctttaaataccgcatgatcctatcggca
aatattgcagattttcaagaaaatcagtgggtgacttgtttccaggagtctgctgaagct
atcctcggacagaacgctgcttatcttggagaattaaaagagaagaacgagcaggctttt
gaagaagttttccagaatgccaactttagatctttcacattcagaatcagggtcaaactg
gagacctacaatgacgagtctcgaattaaggccaccgtgatggacgtgaagcccgtggac
tacagagactacggcagaaggctgatcatgaacatcaggagaaatgcaatgatgtag
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