Muscardinus avellanarius (hazel dormouse): 308276015
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Entry
308276015 CDS
T11987
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform 1
KO
K12878
THO complex subunit 1
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03013
Nucleocytoplasmic transport
mave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308276015 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
308276015 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308276015 (THOC1)
03041 Spliceosome [BR:
mave03041
]
308276015 (THOC1)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
308276015 (THOC1)
Spliceosome [BR:
mave03041
]
Complex C
Other components
EJC/TREX
308276015 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
308276015 (THOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
308276015
NCBI-ProteinID:
XP_080570664
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All DBs
Position
17:complement(<54393583..>54434415)
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AA seq
657 aa
AA seq
DB search
MSPTPPLFSLSEARTRFTKSTREALNNKNIKPLLCTFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSSTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPARIMRKRTAPE
DFLGKGPSRKILMGNDELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEENDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIR
QIECDSEDVKMRAKQLLVAWQDQEGAHATPDNLISALNKSGLSDLADSLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacaccgccgctcttcagtttgtccgaggctcggacgcggtttacgaagtct
actagagaagccttgaacaacaaaaatatcaagccattgttgtgtaccttcagccagtta
cctggcagtgaaaatgaaaaaaaatgtaccctggaccaagctttcagaggtgttttagag
gaagaaattataaatcattcatcgtgtgagaacgttttagctattatttctctcgctatt
gggggagtgactgaaggtatttgcaccgcatccacgccgttcgtgctgctgggagacgtt
ctggattgcctgcctttggaccagtgcgacacaatattcacttttgtggaaaaaaatgtc
gccacctggaaatcaagtacattctattctgctgggaaaaattatttgctacgtatgtgc
aatgacctcctaagaagattatctaaatcccagaatacagtcttctgtgggcgaattcag
ctctttttggctagactttttcctctatctgagaaatcaggtctaaacttgcagagtcaa
tttaatctggaaaatgtcactgttttcaataccaatgagcaagaaagcactctgggtcag
aagcacactgaggatagagaagaagggatggatgtagaagaaggagaaatgggggatgat
gaagcccccacaacttgctccattccaattgattacaacttgtatagaaagttctggtcg
cttcaggattacttcagaaacccagtgcaatgttatgagaagatttcatggaaaactttt
ctcaagtattcagaagaagttttagctgttttcaagagttataaattagatgatactcag
gcctccaggaaaaagatggaagaattgaaaacaggaggagaacatgtatattttgcaaaa
tttttaacaagtgaaaagttgatggatttacagctgagtgacagtaactttcgtcgacac
atcctgttgcagtatctcattctattccagtatctcaagggacaggtcaaattcaaaagt
tcaaactatgttttaactgatgagcaatcgctctggattgaagacactacaaagtcagtc
taccaactgctatctgaaaacccccccgatggagaaagattttcaaagatggtagagcat
atattaaacactgaggaaaattggaactcttggaaaaatgaaggttgcccaagttttgtt
aaagaaagaacatcagacaccaagccggcaagaatcatgcggaagagaacagccccagag
gattttttaggaaaagggcccagcaggaaaattttgatgggaaatgacgagttaacaagg
ctttggaatctctgccctgataatatggaagcctgtaaatcagagaccagggagtacatg
ccgactttggaggagttttttgaagaagccattgaacaagcagaccctgaaaacatggtt
gaaagtgaatataaagctgtgaacaattcaaattatggctggagagccctgagactgttg
gcacggagaagccctcacttcttccagccaaccaaccagcagtttaaaagtttgccagag
tatctcgaaaacatggtaataaagctagccaaggaattgccgcctccttctgaagaaata
aaaacaggcgaggatgaagatgaagaagaaaatgatgctttactaaaggaaaatgaaagt
cctgatgttcgaagagataaacctgtaacaggggaacaaatagaggtgtttgcaaataag
ctgggtgagcagtggaagattctggctccctacttggaaatgaaagactcagaaattagg
cagatcgagtgtgacagtgaagacgtgaagatgagggccaagcagctcctggtcgcctgg
caagaccaagagggcgcgcacgccacgccggacaacctcatcagcgcgctcaacaagtcc
ggattaagcgaccttgcagacagtctaactaatgacaatgagacaaatagttaa
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