Muscardinus avellanarius (hazel dormouse): 308276972
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Entry
308276972 CDS
T11987
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03013
Nucleocytoplasmic transport
mave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
308276972 (UPF1)
03015 mRNA surveillance pathway
308276972 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308276972 (UPF1)
Enzymes [BR:
mave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
308276972 (UPF1)
5.6.2.5 RNA 5'-3' helicase
308276972 (UPF1)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
308276972 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
308276972 (UPF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
308276972
NCBI-ProteinID:
XP_080572090
LinkDB
All DBs
Position
18:<42019502..>42057904
Genome browser
AA seq
1126 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGAGGPG
GAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLR
DMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVD
FVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLN
HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTE
KIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE
KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL
GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP
SNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAAN
VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGR
EKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYY
KEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQ
GRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPK
SKTGRGGRQKNRFGLPGPSQTTLPHSQASQDAASQPFSQGALTQGYISMSQPSQMSQPGL
SQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcacccta
cccagccagacgcagacgccccccggcggccccggaggccccggcgcgggaggcccgggc
ggcgcgggcgcgggcgcggcggccggacagctcgacgcgcaggttggacccgagggcatc
ctgcagaatggagctgtggatgatagtgtggccaagaccagccagctgctggcagagctg
aacttcgaggaggatgaagaagacacctactacaccaaggacctgcccatccatgcctgc
agttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaaaaagtgg
ttctgtaacggccgtggaaatacttctggcagccacattgtgaaccacctcgtgagggca
aagtgcaaggaggtgaccctgcacaaggatgggccgctgggggagacggtgttggagtgc
tacaactgcgggtgccgcaacgtcttcctgctgggcttcatcccggccaaggccgactcg
gttgtggtgctgctgtgcaggcagccctgtgccagccagagcagccttaaggacatcaac
tgggacagctctcagtggcagccgctgatccaggaccggtgcttcctgtcctggctggtc
aagattccctctgagcaagagcagctgcgggcgcggcagatcaccgcccagcagatcaac
aagctggaggagctctggaaggaaaacccctcggccaccttggaggacctggaaaagccg
ggggtggacgaggagccgcagcatgtactcctgcggtacgaggatgcctaccagtaccag
aacatcttcggccccctggtcaagctggaggccgactatgataagaaactgaaagagtcg
cagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcc
tacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggttaaga
gacatgcggctcatgcagggggatgagatatgcctacggtacaaaggggacctggcgccc
ctgtggaaagggatcggccacgtcatcaaagtccctgacaattatggtgatgagatcgcc
attgaactgcgcagcagtgtgggtgcgcccgtggaggtgacccataatttccaggtggat
tttgtatggaagtcgacctcatttgataggatgcagagtgccctgaagacctttgctgtg
gacgagacctcggtgtcgggctacatctaccacaagctgctcggccacgaggtggaggac
gtgatcatcaagtgccagctccccaagcgcttcacggcacaggggctgcccgacctcaac
cactcccaggtctacgctgtgaagactgtgctgcagagacctctgagtctgatccagggc
ccaccgggcacggggaaaactgtgacctcagccaccattgtctaccacctggcacggcaa
ggcaatgggcctgtgcttgtctgtgctccaagcaacatagctgtggatcagctgaccgag
aagatccaccagacggggctgaaagttgtgcgcctctgtgccaagagccgcgaggccatc
gactctcctgtgtccttcctggccctccacaaccagatcaggaacatggacagcatgccg
gagctgcagaagctgcagcagctgaaggacgagacaggggagctgtcgtctgcggacgag
aagcggtaccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtc
atctgctgcacctgcgtgggtgccggtgacccgaggctcgccaagatgcagttccgctcc
attttaatcgacgagagcacccaagccaccgagccggagtgcatggttcccgtagtcctt
ggagcaaagcagctcatccttgtgggcgaccactgtcagctgggcccagtggtgatgtgc
aagaaggcagccaaggctggactgtcacagtcgctcttcgagcgcctggtggtgctgggc
atccgccccatccgcctgcaggtgcagtaccggatgcaccccgcgctcagcgccttccca
tccaacatcttctatgagggctctctccagaacggtgtcactgcagcggaccgtgtgaag
aagggctttgacttccagtggccccagcccgataagcccatgttcttctacgtgactcag
ggccaggaggagatcgccagctcaggcacatcttacctaaacaggacggaagcggccaac
gtggagaagatcaccacgaagctgctcaaggcgggcgccaagcccgaccagataggcatc
atcacgccctacgagggccagcgctcctacctggtacagtacatgcagttcagcggctcc
ctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttccaggggcgg
gagaaggactttatcatcctctcctgtgtgcgggcgaacgagcaccaaggaatcgggttt
ttaaatgatcccaggcgccttaatgtggctctgaccagagccaggtacggagtcatcatt
gtaggcaacccgaaggccctgtcaaagcagccgctgtggaaccacctgctcaactactac
aaggagcagaaggtgctggtggaggggccactcaacaacctgcgggagagcctcatgcag
ttcagcaagccccgcaagctggtcaacaccatcaacccgggggcccgcttcatgaccaca
gccatgtacgacgcccgggaggccatcatcccaggttccgtgtatgaccgcagcagccag
ggtcggccctcgaacatgtacttccagacccatgaccagatcggcatgatcagcgctggc
ccaagccatgtggctgccatgaacatccccatccccttcaacttggtcatgccacccatg
ccgccacccggctactttggacaggcgaatgggccggccgcaggtcggggtgcccccaaa
agcaagaccggtcgtggagggcgccagaagaaccgcttcgggctccctgggcccagccag
accaccctcccacacagccaggccagccaggacgcggcctcccagcccttttcgcagggc
gcactgacacagggctacatctccatgagccagccctcccagatgagccagcctggcctc
tcgcagcccgagctgtcccaggacagttaccttggtgacgaatttaaatcacagattgac
gtggcgctgtcacaagactccacgtaccagggagagcgggcataccagcacggcggggtg
acagggctgtcccagtactag
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integrated database retrieval system
