Muscardinus avellanarius (hazel dormouse): 308279663
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Entry
308279663 CDS
T11987
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308279663 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308279663 (PATL1)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
308279663 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
308279663 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
308279663
NCBI-ProteinID:
XP_080575907
LinkDB
All DBs
Position
1:complement(<226190600..>226231945)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKP
PAAASEQTGDGERDEMDLLGDQEETLAERLSEMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDERDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAAPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCNV
PNSSLLGHPFSPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPPGTTPPQQHPPGPGAHLQNLRSQAPVFRPDTTHLHPQ
HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSGHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEGERPALMDERKHKICSMYENLRGKVPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLNPFSLLLYHLPSVTVTSLLQQLM
NLPQSTAAPAPSNPHLAAVLQNKFGLSLLLVLLSRGEDLQSSDPAAEPAQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcag
ggtctgggagaggaagatgaggagattgatcagttcaatgatgatacttttgggtcaggt
gcagttgatgatgattggcaggaagcgcacgagcgcctggctgagctggaagagaagccc
ccggcggcagccagtgagcagactggcgatggggagagggatgagatggacttgctgggt
gaccaggaggagactctggcagaaagactcagcgagatggtgatcgagaacgaactagaa
gacccagctatcatgcgggccgtgcagaccaggccagtattgcaacctcaaccaggaagt
ctgaattctagcatctgggatggatccgaagttctgagacgaatccgaggacctctactt
gctcaggaaatgcctacggtgtctgtattagagtatgccttgcctcagaggcccccacag
ggcccagaagatgagcgggacctttctgaacgtgcattaccaaggcggtcaacgtcgccc
atcattgggagtcctcctgtcagagctgtccccataggcaccccacctaagcagatggcc
gcaccaagcttcaaccagcagattctgtgtccgaagcctgtccatgttcggcccccgatg
cctccacgttatcctgctccctatggtgagaggatgtcgccaaaccagctctgcaatgtc
ccgaactcttccctcctgggtcaccctttttctccaaatgttcctcctgttctcagcccc
ctccagagagcacagcttctaggaggagcacagttacagcctggacgcatgtctcccagc
cagtttgcacgggtccctgggtttgttggtagtccacttgctgccatgaatcccaagttg
cttcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccaccccctggtacaacacctccacagcagcaccctcctggcccaggcgctcatctg
caaaacctaagatctcaggccccagtgttcagaccagacacaactcaccttcatccacaa
cacaggcggctcttgcatcagagacagcaacagaatagaagtcagcatcggaatctcaat
ggtgccggagatagaggaagtcaccggagcggccatcaagatcatctccggaaagatcca
tatgccaatctcatgttgcagcgggaaaaggattgggtgtccaaaatccagatgatgcag
ctgcagagcactgacccctacctggatgacttttactaccagaattactttgaaaaactg
gagaaactgtcagctgctgaagaagtgcaaggtgatggccctaaaaaggagcgcaccaag
cttatcacccctcaggtggccaagctggaacatgcctataagccagtgcagtttgagggc
tccttggggaagcttactgtctctagtgtgaataatcctcgaaaaatgattgatgctgtt
gtgacatctcggagcgaggatgatgagacaaaagaaaagcaggttcgggacaagagaaga
aaaacccttgtcataattgaaaaaacctatagtttactccttgatgtggaagattatgag
aggcgttatcttctgagtctagaaggagagcggcctgccttaatggatgagagaaagcac
aaaatctgtagcatgtatgagaacttgaggggtaaagtgcctggacaagagaggccaagc
gatgaccactttgtacagatcatgtgtatccggaaagggaagaggatggttgcccgtatt
ctccctttcctctccacagagcaggcagctgacattctcatgacaactgccaggaacctc
cctttccttatcaagaaggatgcacaagatgaggtgctgccctgcttactgaatcccttc
tctctcctcctctatcatcttccatcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagtacagccgcaccagcaccctccaatcctcacctcgctgctgtgctc
cagaacaagtttggcctgtcactgctccttgtcctcctgagccgtggggaagacctccag
agttcagaccctgctgcagaaccagcacagaacaaccagtggacggaggtgatgttcatg
gcaacccgagagcttctacggattccccaagcagccctggccaagcccatctccataccc
acaaacctggtgtcccttttctctcgctacgttgaccggcagaaactgaacttgctggag
acaaaactgcagctagttcaagggatacgataa
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