Mycobacterium avium subsp. paratuberculosis E1: RC58_04645
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Entry
RC58_04645 CDS
T03787
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RC58_04645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mavi03019
]
RC58_04645
Messenger RNA biogenesis [BR:
mavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RC58_04645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AJK74398
LinkDB
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Position
1010239..1011915
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AA seq
558 aa
AA seq
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MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
LPDLRHIEDRLDDIEALVLTHAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHR
LKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDG
RPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERV
VLITTGTQGEPMSALSRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGA
RVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTWRMLRANSKLAARTGVPEESI
LLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKW
VGETYRRQPMIVPTVIEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtagacctcgccccgcctggcccgctggccgccggggggttgcgggtcaccgcg
ctgggcggcatcagcgaaatcggccgcaacatgacggttttcgagcacctgggccggctg
ttgatcatcgactgcggggtgatgtttcccacccacgacgagcccggcgtcgatctgatc
ctgccggacctgcggcacatcgaagaccggctcgacgacatcgaggcgctggtgctcact
cacgcgcacgaggaccacatcggcggcattccctacctgctcaagctgcggcccgacatc
ccggtcgtcggttcgaaattcaccctggccctggtcgccgccaagtgccgcgaacaccgg
ctcaagccggtgttcgtcgaggtgtccgagggacacaagagcacccacggcgtgttcgaa
tgcgaatacttcgccgtcaaccactccatccccgacgcgctggcgatcgccgtacacacc
ggcgccggaacggttttgcacaccggcgacatcaagctcgaccagcttccgctggacggc
cggcccaccgatctgcccggcatgtcgcggctcggtgacgccggggtcgacctgttcctg
tgcgattcgaccaacgccgagctgcccggcgtcggcccctcggaaagtgaagtcggcccg
accctgcaccggctgatccgcggcgccgagggccgcgtcatcgtggcctgcttcgcctcc
aacgtggaccgggttcaacagatcatcgatgccgcagtggcattgggccggcgggtgtcg
ttcgtcggccggtcgatggtgcgcaacatgggcatcgcccgcgaactcggatttttgcgg
gtggccgacgccgacgtgatcgacataggcgccgccgagctgatgccgccggagcgggtg
gtgctgatcaccaccggcacccagggcgagccgatgtcggcgctgtcgcggatgtcgcgc
ggcgagcaccgcagcatcacgttgaccgcgggcgaccttgtggtgctggcctcgtcgctg
atcccgggcaacgaggaggcggtctacggcgtgatcgacgagctcgccaagatcggcgcc
cgggtggtcaccaacgcccaagcgcgcgttcatgtttcgggccacgcctacgccggtgag
ctgttgttcctgtacaacggcgtccggccgcgccacgtgatgccggtgcacgggacgtgg
cggatgctgcgggccaactccaagctggcagcccgcaccggcgtgccggaggagtcgatc
ctgctggccgagaacggggtgagcgtcgacctggtcgcgggcagggcctcgatctccggg
gcggtgccggtcggcaagatgttcgtcgacggcctggtcgacggcgacgtcggcgacatc
acgttgggggagcggctgattctgtcgtcgggtttcgtggcggtgacggtggtggtgcag
cgcggcaccgggcgtccggtggcgccaccgcatctgcattcgcgcggcttctccgaggac
cccaaggcgctcgagcccgcggtgcgccgggtcgaggaggagctcgaggcgctggtggcc
gagaacatcaccgaccccagccgcatcgcccagggggtgcggcgcaccgtcggcaaatgg
gtgggcgaaacctaccgccgacagccgatgatcgtccccaccgtcatcgaggtctag
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