Mycobacterium avium subsp. paratuberculosis E1: RC58_04970
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Entry
RC58_04970 CDS
T03787
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mavi03016
]
RC58_04970
Enzymes [BR:
mavi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RC58_04970
Transfer RNA biogenesis [BR:
mavi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RC58_04970
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJK74454
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All DBs
Position
complement(1068792..1070078)
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AA seq
428 aa
AA seq
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MGEPSAEGPGSGVPAPIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGF
RYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAE
VGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAA
LDVELLIELRAAIADVLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVR
DQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQ
RRSAATWLAALDAARQSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSER
VHVPTENLVAPDLVRRLCWDWEPTPDPFAAVDAFLCAGHARPWQRELVDPVLARALQQPP
PAVADDDG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaccgtcggccgaggggccgggtagcggcgtgcccgctcccatcccgctgccg
cacccgtccgaaggcgtcccgccgatctcggccagcgtgcccgacatcgaggacgcggcg
cggcggctggaccgcggccgcgggccgttcgcggtggacgccgagcgggcgtcgggattc
cgctactccaaccgggcctacctgatccagatccgcagggccggggccggcaccgtgctg
atcgacccggtgagccacggcgccgacccggtgcgagcgctgcgaccggtggccgaggtg
ctcggcagcgacgagtggattctgcactccgcggatcaggacctgccctgtctggcggag
gtgggcatgcggccgccggcgctgtatgacaccgagctggccggtcggctggccgggttc
gagcgggtgaacctggcgaccatggtcgagcggctgctgggcttcgggctggccaagggc
cacggcgcggccgactggtccaagcgcccgctgcccgccgaatggctcaactacgccgcc
ctggatgtggagctgctcatcgagctgcgcgccgcgatcgccgacgtgctggcggagcag
ggcaaaaccgattgggccgcacaggaattcgactatctgcgggaggcgggttccaaggag
ccgggccccgccgcgcggcgcgaccggtggcggcggacgtcgggaatccatcgggtgcgc
gatcagcgcggcctggccgcggtgcgcgaactgtggttgacgcgcgaccgcatcgcgcag
cgccgcgacatcgccccgcggcgcatcctgcccgactcggcgatcatcgaggccgccctg
gccaacccgacgaccatcgaggagctggtggcgctgccggtgttcggcgggcgcaatcaa
cggcgcagcgccgcgacctggttggcggcgctggatgcggcccggcagagcgagaatccg
ccggtggactccgaaccgccgaacggaccgccgccgccggcgcggtggagccggcgcaaa
ccggaggcggccgcgcggctggaggccgcgcgcgcggcgctggccgaggtgtccgaacgc
gtgcacgtccccaccgagaacctggtcgcgccggacctagtgcgacggctgtgctgggac
tgggagcccacccccgacccgttcgcggcggtcgacgcgttcctgtgcgccgggcacgcc
cggccctggcagcgcgaattggtggatccggtcctggcccgggcgctgcagcagccgccg
ccggcggttgcggacgacgacggctga
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