Mycobacterium avium subsp. paratuberculosis E1: RC58_06440
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Entry
RC58_06440 CDS
T03787
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RC58_06440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mavi03019
]
RC58_06440
03009 Ribosome biogenesis [BR:
mavi03009
]
RC58_06440
Enzymes [BR:
mavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RC58_06440
Messenger RNA biogenesis [BR:
mavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RC58_06440
Ribosome biogenesis [BR:
mavi03009
]
Prokaryotic type
rRNA helicases
RC58_06440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AJK74702
LinkDB
All DBs
Position
1364263..1365963
Genome browser
AA seq
566 aa
AA seq
DB search
MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE
HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGVL
INLQPDRAAAKARGRDGGKPRRKYGG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcccggacagctcgactgaggctgcctccccgacatttgccgacctgcagatc
catccctcggttttgcgggcgatcgccgacgtcggctacgagacgcccaccggcatccag
gccgcgaccatcccggcgttgatggccggttccgacgtcgtcgggctggcccagaccggc
accggcaagacggccgcgttcgcgatcccgatcctgtccaagatcgacgccgccagcacc
gccacccaggcgctggtgctggcgcccacccgggagctggcgttgcaggtggccgaggcg
ttcagccgctacggcgcgcatctgccgaagatcaacgtgctgccgatctacggcggctcg
tcctacgccgtgcagctggccggattgaaacgcggcgcccacgtggtggtcggcacgccg
ggccgggtgatcgaccacctcgagcgcggcacgctggacctgtcgcacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatggggtttgccgaagaggtcgaccgcatc
ctgtccgagaccccggaatacaagcaggtcgcgctgttctcggcgaccatgccgcccgcg
atccgcaagctcaccgccaagtatctgcacgatcccctcgaggtcagcaccaaagcgaaa
accacgaccgccgagaacatttcgcagcgctacatccaggtcgccggcccgcgcaaaatg
gacgcgctgacccgggtgctggaggtcgagccgttcgaggcgatgatcgtgttcgtccgg
accaaacaggccaccgaggaagtcgccgaaaggctcagggcgcgcggcttctcggcggcc
gcgatcaacggggacatcccgcagggccagcgtgagcggaccgtcgccgccctcaaggac
ggcggcatcgacatcctggtcgccaccgacgtagccgcccgcggcctggacgtcgaacgg
atctcacacgtgctcaactacgacatcccgcacgacaccgagtcctacgtgcaccggatc
ggacgcaccggccgggcgggacgctcgggaaccgcgctgctgttcgtctccccgcgagaa
cgccacctgctcaaggccattgagaaggcgacccgccagccgctcaccgaagccgagctg
cccaccgtcgaggacgtcaacgcccagcgggtggccaagttcgccgactccatcaccgcc
gcgctcggcgctcccggcatcgatctgttccgcaagttggttcaggactacgaacgcgag
cacgacgtcccgatggccgatatcgccgccgcgctggccgtgcagtcacgcgacggcgag
gagttcctgatggcgcccgaaccgccgcgggagcgacgcgaacggcacaccgaacggcgc
gagcgcaccgagaaacccaggagcacaaggccgttggccacctaccgcatcgcggtgggc
aaacggcacaagatcggtccgggcgcgatcgtgggcgccatcgccaacgagggcgggctg
catcgcagcgatttcggccacatcgccatcggacccggcttctcgctggtggagttgccg
gccaagctgcccaagtcgacgctgaaaaggcttgagcagacccgcatctccggagtgctg
atcaacctccagccggaccgggcggcggccaaggcgcgcggtcgggacggcgggaaacca
cgcaggaaatacggcggatga
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