Mycobacterium avium subsp. paratuberculosis E1: RC58_06840
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Entry
RC58_06840 CDS
T03787
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RC58_06840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mavi03000
]
RC58_06840
03400 DNA repair and recombination proteins [BR:
mavi03400
]
RC58_06840
Enzymes [BR:
mavi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RC58_06840
Transcription factors [BR:
mavi03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RC58_06840
DNA repair and recombination proteins [BR:
mavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RC58_06840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HHH
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AJK74769
LinkDB
All DBs
Position
complement(1451404..1452927)
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AA seq
507 aa
AA seq
DB search
MHDDFERCYRAVQSKDARFDGWFVTAVLTTGTYCRPSCPVRPPFARNVRFYPTAAAAQRA
GFRACKRCRPDASPGSPEWNVRGDVVARTMRLIADGTVDRDGVGGLAARLGYTTRQLERL
LQAEVGAGPLALARAQRAQTARVLIETTELPFGDVAFAAGFSSIRQFNDTVRAVFESPPS
VLRRRASARCASAANSPGAVCLRLPVRTPFGFHGVFGHLAASVVPGCEEVRDGAYRRTLR
LGFGTGIVTLTPAADHVRCELVLDDFRDLTAAIARCRRLLDLDADPEAVDEALAADPQLA
PAVRKAPGQCIPRTVDEAELAVRAVLGQQVSIRAARTHAGRLVAAYGRAVHDPEGTLTHT
FPSVQQLADVDPIHLAVPKARQRTLAALVAGLADRSIVLDTGCDWQSARTQLLALPGVGP
WTAEVIAMRGLGDPDAFPAADLGLRVAAKRLGLPSGQRSLTAASARWRPWRSYATQYLWT
TLEHPVNHWPPQQPSKGILNDVVKPPR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgacgatttcgaacgctgctaccgcgccgtccagtccaaggatgcgcggttcgac
ggctggttcgtcaccgccgtgctgaccaccggaacctactgccggcccagttgcccggtg
cgcccgccgttcgcccgtaatgtgcggttttatccgaccgcggcggccgctcagcgcgcc
ggcttccgggcctgcaagcggtgccgtcccgacgcctcgccgggatcgccggaatggaac
gtgcgcggcgacgtggtggcgcgcacgatgcggctgatcgccgacggcacggtggaccgc
gacggtgtcggcggcctggccgcccggctgggctacaccacccggcagctggagcggttg
ctgcaggcggaggtcggcgccggtccgctcgcgctggcccgggcgcaacgcgcccagacg
gcgcgggtgctgatcgagaccacggagctgcccttcggcgacgtggcattcgccgccggc
ttctccagcattcgtcagttcaacgacaccgtgcgcgcggtgttcgaaagcccgccgagc
gtgctgcgccggcgcgcctcggcgcgctgcgcatccgcggccaattcgcctggcgccgtg
tgccttcggctgccggtccgcacacccttcggcttccatggcgtcttcggtcacctcgcc
gcgagcgtcgttcccgggtgcgaggaggtccgcgacggcgcctaccgacgcacgctgcgg
ctggggttcggcaccggcatcgtcacgttgacccccgccgccgaccacgtccgttgcgag
ctggtgctcgacgacttccgggacctgacggcggcgatcgcccgttgccggcggctgctg
gatctcgacgccgaccccgaagcggtggacgaggcgctggccgccgacccgcagctcgcc
ccggcggtgagaaaggcgcccggccaatgcattccgcgcaccgtcgacgaggccgagctc
gcggtacgcgccgtgctgggccagcaggtgtccatccgggcggcgcgcacccatgcgggg
cgtttggtcgccgcctacggccgggcggtccacgaccccgagggaaccttgacccacacc
ttcccgtcggtgcagcagctggccgacgtcgaccccatccatctggcggtgcccaaggcc
cggcagcgcacgctggccgcgctggtcgccggcctcgccgaccgcagcatcgtcctggat
accgggtgcgactggcaaagcgcccgaacgcaattgctggcattaccgggagtcggcccg
tggaccgcggaagtcattgcgatgcgcggcctgggcgatcccgatgcgttcccggccgcc
gacctgggtctgcgcgtcgcggccaaacggctcggattgccgtcgggccagcggtcgctg
accgctgccagcgcacgctggcggccctggcgttcctatgccacgcaatacctttggacc
actctcgagcatccggtgaaccattggccaccgcagcagccatcgaaggggattctcaat
gacgttgtcaagccgccgcggtag
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