Mycobacterium avium subsp. paratuberculosis E1: RC58_10715
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Entry
RC58_10715 CDS
T03787
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mavi03019
]
RC58_10715
Enzymes [BR:
mavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RC58_10715
Messenger RNA biogenesis [BR:
mavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RC58_10715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
ABC_tran
T2SSE
PhoH
DUF3734
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AJK75435
LinkDB
All DBs
Position
complement(2339450..2343394)
Genome browser
AA seq
1314 aa
AA seq
DB search
MAEPSFPVSGAQLRGRLDGLTIRDAARLGRRLKKLRGAAPDKLRQLADQIAAAEAVVAAR
HAAVPAVSYPDLPVSERRREIADAIRAHQVVVIAGETGSGKTTQLPKICLEAGRGIRGTI
GHTQPRRLAARTVAQRIADELGSPLGGTVGYTVRFADQVSDRTLIKLMTDGILLAEIQRD
RRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKLIITSATIEPRRFSEHFANAP
VIEVSGRTYPVEIRYRPLEIALPSATADDPDDPDHEIVRTETRDEVEAIVDAIAELEAEP
PGDVLVFLSGEREIRDTAEALTGLKHTEVLPLYARLPTAEQQKVFAPHTGRRVVLATNVA
ETSLTVPGIRYVVDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRL
YSEADFAARPRYTEPEILRTNLAAVLLQMAALQLGDIENFPFLDPPDRRSVRDGVQLLTE
LGAFDRQGAITERGRRLARLPVDPRLGRMILAAQTEGCVREMLVLAAALSIPDPRERPSD
REEAARQKHARFADEHSDFMSYLNLWRYLREQRKDLSGNQFRRLCRAEFLHYLRIREWQD
LVGQLRGIAGELGITEESGEPADPARVHAALLAGLLSHVGMRREDSREFAGARNSRFVLA
PGSVLSKRPPRWVVVAELIETTRLYGRTAARIQPEAVERVAGDLVQRSHSEPHWDPDRGE
VMAYERVTLYGLPLVSRRRVGYARIDPVLARELFIRHALVEGDWHTRHRFFADNARLRGE
LEELEERARRRDLVVGDDDVYALYDARIPTDVVSARHFDAWWKKQRHQTPDLLTFTRADL
LRTEETGDADRPDSWRAGDVTLPLTYRFQPGAADDGVTVHVPIDVLARLGGDEFAWQVPA
LREELVTALIRSLPKDLRRNFVPAPDTARAVLGAIDPAAEPLLPALQRELRRRSGVSVPI
DAFDLDKLPAHLRMTFAVESTDGTELARGKDLRALQERLTTPARQAVADTVGARLQRTGL
RGWPDDLDELPRVVQRSLDGRTVRGYPAFVDTGAAVDLRVFATSAEQVRMMGAGLRRLVR
LSIPSPAKAIARQLGPRTRLALGGNPDGSLPALLEDCADAATDALVPQPVWTRDEFTALR
QRVAKTLGPTTIELVGRVEQVLAAAQQVQLALPATPPPAQADAVADIRAQLDRLLPAGFV
TATGGARLGDLTRYLSAIRRRLDGLARAGQADRDRMRRVHAAQHAYDELVDELPEAAKTA
ADVRDIAWQIEELRVSLWAQQLGTPRPVSEQRIHRAIDAARQRYRVALPPTLNL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaccgtccttcccggtgtccggggcgcagctgcgcggccggcttgacggtctg
accattcgcgacgccgcgcgcctcggccggcggctgaagaagctgcgcggcgccgcgccc
gacaagctgcgccagctggccgatcagatcgccgccgcggaagcggtcgtcgccgcccgc
cacgccgccgtcccggccgtcagctatcccgatctgccggtcagcgagcggcgccgggag
atcgccgacgcaatacgcgcgcatcaggtggtggtgatcgccggggagaccggatcgggc
aagacgacccagctgcccaagatctgcctcgaggccggccggggcatccgcggaaccatc
ggacacacccaaccgcgccggctcgccgcgcgcaccgtcgcgcagcgcatcgccgacgag
ctgggcagcccgctgggcgggacggtcggctacaccgtccggttcgctgaccaggtcagc
gaccgcaccctgatcaagctgatgaccgacggcatcctgctcgccgagatccagcgcgac
cgccgcctgctgcgctacgacacgttgatcctcgacgaggcgcacgagcgcagcctgaac
atcgattttctgctgggctacctgcgcgagttgctaccccgtcggccggatctgaagctc
atcatcacctcggcgacgatcgagccgcggcggttctcggaacacttcgccaacgcgccc
gtcatcgaagtgtcgggacgcacgtacccggtggagatccgctaccggccgctcgagatc
gccctgccctccgcaaccgcggacgatcccgacgaccccgaccacgagatcgtgcgcacc
gaaacacgcgacgaggtcgaggcgatcgtcgacgcgatcgcagagctcgaggccgagccg
cccggggacgtgttggtgtttctgtccggggaacgcgaaatcagggacaccgcagaggct
ttgacggggctgaagcacaccgaggtgcttccgctgtacgcccggctgcccaccgccgag
cagcagaaggtgttcgcgccccacaccggccggcgggtggtgctggcgaccaacgtcgcc
gagacgtcgctgaccgtgcccggcatccgctacgtcgtcgacccgggaaacgcccgcatc
tcgcgctacagccgccggttgaaggtgcagcggttgccgatcgagccgatctcgcaggcg
tcggccgcgcagcgggccggccgctgcggccgcgtcgcgcccggcgtgtgcatccggctg
tactccgaggccgatttcgcggcccgcccgcgctacaccgaacccgagatcctgcgcacc
aacctcgccgcggtgctgttgcagatggcggcgctgcagctgggcgatatcgagaacttt
ccgttcctcgacccgccggaccggcgcagcgtccgcgacggtgtgcagctgttgaccgag
ctcggcgcgttcgaccggcagggcgcgatcaccgagcggggccgtcggctcgcccggctg
ccggtcgaccccaggttgggccggatgatcctggcggcccagaccgagggttgcgtgcgc
gagatgctggtgctggccgcggcgctgagcatcccggatccgcgggaacggccgagcgac
cgggaggaagccgcccgccaaaagcatgcccggttcgccgacgagcactccgacttcatg
tcgtatctcaacctgtggcgctatctgcgtgagcagcgaaaggacttgtccggcaaccag
tttcggcggctgtgtcgcgccgaattcctgcactatctgcggattcgggagtggcaggat
ctggtcgggcagttgcgcggcatcgccggggagctgggtatcaccgaagagtccggcgag
ccggccgacccggcccgggtgcacgcggcgctgctcgccgggctgctgtcgcacgtgggt
atgcgccgcgaggactcccgcgagtttgccggcgcgcgcaactcccgtttcgtgctggcg
cccgggtcggtgctcagcaaacggccaccgcgctgggtggtggtggcggagctgatcgag
accacccgcctctacggccgcaccgccgcgcgcatccagcccgaggccgtcgagcgggtg
gccggcgacctggtgcagcgcagccacagcgaaccgcattgggaccccgaccgcggcgag
gtgatggcctacgagcgggtgacgctgtacgggctgccgctggtgtcgcgccggcgggtc
gggtatgcccgcatcgatccggtgctggcccgcgaattgttcatccggcacgcgctcgtg
gagggggactggcacacccggcaccgcttcttcgcggacaacgcccggctgcgcggcgaa
ctcgaggagctggaggagcgcgcccgccgccgcgacctggtggtcggcgacgacgacgtc
tacgcgctctacgacgcccgcatccccaccgacgtggtgtccgcgcggcacttcgacgcg
tggtggaaaaagcagcgacaccagaccccggatctgctcaccttcacccgcgccgacctg
ctgcgcaccgaggagaccggcgacgccgaccgtcccgacagctggcgggccggcgacgtg
acgttgccgctgacctaccggttccagccgggcgccgccgacgacggggtcaccgtgcac
gtgccgatcgacgtgctggcgcggctgggcggtgacgagttcgcctggcaggtgccggcg
ttgcgcgaggagctggtgaccgcgctcatccggtcgctgccgaaagacctccgccgcaac
ttcgttcccgcgcccgacaccgcgcgcgcggtgctgggcgccatcgatccggccgccgag
ccgctgctgcctgcgctgcagcgcgaattgcgccggcgcagcggggtttcggtgcccatc
gacgcgttcgatctggacaagctgccggcgcatctgcggatgacgttcgcggtggagtcc
accgacgggaccgaactcgcccgcggcaaggatctgcgggcactgcaggaacggctcacc
acgccggcgcggcaggcggtcgccgacacggtcggggcccggctgcagcgcaccgggttg
cgcggctggcccgacgacctcgacgaactgccccgcgtcgtgcagcgcagcctcgacggc
cgcacggtgcggggctacccggcgttcgtggacaccggcgctgcggtcgacctgagggtg
ttcgcgacatcggccgaacaggtccgcatgatgggcgccggtctccgccggctggtacgc
ctgagtattccgtcaccggccaaagctattgcgcgtcaacttggtccacgcacccgcctg
gcgctgggcggcaacccggacggctcgttgccggcgctgctggaagactgcgccgacgcc
gcgaccgacgcgctggtgccgcagccggtgtggacccgcgacgagttcaccgcgctacga
cagcgggtggcaaagacgctggggcccaccaccatcgagctggtgggccgtgtcgagcag
gtgctggccgccgcccagcaggtgcaactggcgttgcccgcgacgccgccgcctgcccag
gccgacgcggttgccgacatccgcgcccagctggaccggctgttgccggccggcttcgtc
accgccaccggcggcgcgcggctgggcgatctcacccgctacctgtcggcgatccgtcgc
cgcctggacgggctggcccgggccggccaggccgaccgcgaccggatgcggcgggtgcac
gccgcgcagcacgcctacgacgagttggtggatgagctacccgaggccgcgaagacggcc
gccgacgtccgcgacatcgcgtggcagatcgaggaactgagggtgagcctgtgggcccag
cagctcggcacgccgcgcccggtcagtgagcaacgcatccaccgggcgatcgacgcggcg
cggcagcgttaccgcgtggctttgcctcccactctcaacctatag
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