Mycobacterium avium subsp. paratuberculosis E1: RC58_12405
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Entry
RC58_12405 CDS
T03787
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
RC58_12405 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
mavi01007
]
RC58_12405 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mavi03016
]
RC58_12405 (lysS)
Enzymes [BR:
mavi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
RC58_12405 (lysS)
Amino acid related enzymes [BR:
mavi01007
]
Aminoacyl-tRNA synthetase
Class II (A)
RC58_12405 (lysS)
Transfer RNA biogenesis [BR:
mavi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
RC58_12405 (lysS)
Prokaryotic type
Other AARSs
RC58_12405 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LPG_synthase_C
tRNA-synt_2_TM
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
BOF
Motif
Other DBs
NCBI-ProteinID:
AJK75732
LinkDB
All DBs
Position
2726312..2729569
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AA seq
1085 aa
AA seq
DB search
MPAAAGWTVGVIATVSLLGSVSPLIRYLIKVPREFINDYLFNFPDTSIAWSFVLALLAAA
LTARKRIAWLLLLGNMILAAALNVADIAAGDNTAAEIFGENLGFAVHIVAIVLLVLAYRE
FWAKVRKGALVKAAAVLVAGDVVGILVSWGLVELFPGTLARQDRLPYVVNRVVGFALADP
DLFTGRPHVFLNAIFGLFGALALIMATIVLFQSQRAENALTGEDESAIRGLLELYGKNDS
LGYFATRRDKSVVFAQSGRAAITYRVEIGVCLASGDPIGDPRAWPQAVDAWLGLCQTYGW
APGVMGASTQGARTYREAGLNALELGDEAILRTSEFKLSGPDMRGVRQAVTRARRAGLTV
RIRRHRDISPEAMADTIARADAWRDTQTERGFSMALGRLGDPADGDCLLVEAIDRDGSVV
AMLSLVPWGTTGVSLDLMRRSPSSPNGTIELMVSELALNAESLGITRISLNFAMFRSAFE
QGAQLGAGPVARLWRGLLLFFSRWWQLETLYRSNMKYQPDWVPRYACYEDARLIPRVGVA
SVIAEGFLVLPFSRRDKVHTGHHPAVPARLAQSGLLHHDGSAPDVSGLRPERTDAEEARS
RLPEQVRVRLAKLKVLQRNGVDAYPVGCPPSHTVAQALDADDQQDITVAGRILRIRDFGG
VLFAQLRDWSGEMQVLLDNSRLERGRTADFTAAIDLGDLVEVSGQMGFSKKGTRSLIVTD
WRMIGKCLRPLPNKWKGLTDPEARVRTRYVDLAVNPESRELIAARSEVLRSVRQTLFAKG
FIEVETPILQQIHGGATARPFVTHINTYDMDLFLRIAPELYLKRLCVGGVERVFELGRAF
RNEGVDFSHNPEFTLLEAYQAHADYRVWIDGCRELIQNAAQAAHGEQTVLRPGADGRLQP
VDISGIWAVKTVHDAVSEALGEQVDPGTSLSTLRKLSDAARIPYRAHWDAGAVVLELYEH
LVEDRTEEPTFYVDFPTSVSPLTRPHRSRPGVAERWDLVAWGVELATAYSELTDPVEQRR
RLQEQSLLAAGGDPEAMELDEDFLQAMEYAMPPTGGLGMGVDRLVMLITGRSIRETLPFP
LAKPH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
gtgccggcggccgccgggtggaccgtgggtgtgatcgccacggtgtcgctgctgggcagc
gtgtccccgctgatccggtacctgatcaaggtcccgcgcgagttcatcaacgactacctg
ttcaacttccccgacacaagcatcgcctggtcgttcgtgctggccctgctggcggcggcg
ctgacggcacgcaagcggatcgcctggctgctgttgctgggcaacatgatcctggccgcc
gccctcaacgtcgccgacatcgccgccggtgacaacaccgccgccgagatcttcggcgag
aacctgggtttcgccgtccacatcgtcgcgatcgtcctgctggtgctggcgtatcgggag
ttctgggccaaggtccgcaagggcgcgctggtcaaggcggccgcggtgctggtcgccggg
gacgtggtgggcatcctggtgtcctggggcctggtcgagttgttccccggcaccctggcc
cgccaggaccggctgccctacgtggtcaaccgggtggtcggcttcgcgctagccgacccg
gaccttttcaccggccgcccgcacgtgttcctcaacgcgatcttcgggttgttcggcgcg
ctcgcgctgatcatggcgaccatcgtgctctttcaatcccagcgcgcggagaacgcgctg
accggtgaggacgagtcggccatccgcggactgctggagttgtacggcaagaacgactcg
ctgggctacttcgccacccgccgcgacaaatcggtggtcttcgcccagagcggacgcgcc
gccatcacctaccgggtcgagatcggggtctgtttggccagcggcgacccgatcggcgat
ccccgcgcgtggccgcaggcggtcgacgcctggctgggcctgtgccagacctacggctgg
gcgcccggcgtgatgggcgccagcacgcagggggctcggacctatcgcgaggccggcctc
aacgcgctcgagctgggtgacgaggccatcctgcgcacctccgagttcaagctgtccggc
ccggacatgcgcggcgtccgccaggcggtgacccgggcccgccgggccgggttgacggtg
cggatccgccggcaccgcgacatctcccccgaggcgatggccgacaccatcgcccgcgcc
gacgcctggcgtgacacccagaccgagcgcggcttctccatggcgctgggccggctcggt
gacccggccgacggggactgcctgctggtggaggccatcgaccgggacggcagcgtggtc
gcgatgctgtcgctggtcccgtggggcaccaccggtgtgtcgctggacttgatgcgccgg
tcgccgagctcacccaacggcaccatcgagctgatggtcagcgagctggcgttgaacgcc
gaaagccttggtatcacccgcatttcgctgaacttcgcgatgtttcggtcggcgttcgaa
cagggcgcccagctgggcgccggcccggtcgcgcggctgtggcgggggttgctgctgttc
ttctcccggtggtggcagctggagaccctgtaccgctcgaacatgaagtaccaacccgat
tgggttccgcgctacgcctgctacgaggatgcccggctgatcccccgggtcggcgtcgcg
tcggtgatcgccgagggcttcctggtgttgccgttcagccggcgcgacaaggtgcacacc
ggccatcaccccgccgtgccggcccggctggcgcagtcgggcctgctgcaccacgacggc
tcggcaccggacgtgagcgggctgcgcccggagcgcaccgacgccgaggaggcgcgctcg
cggctgcccgagcaggtccgggtgcgcctggccaagctgaaggtgttgcagcgcaacggt
gttgacgcctatccggtgggctgtccgcccagccacaccgtcgcgcaggcgctggacgcc
gacgaccagcaggacatcaccgtcgccgggcggatcctgcggatccgcgacttcggtggt
gtgctgttcgcccagctgcgggactggtcgggggaaatgcaagtgctgctggacaattcg
cgtctggagcggggccgcacggccgacttcaccgcggccatcgatctcggcgacctggtc
gaggtgtccggtcagatggggttctccaagaaaggcacccggtcgctgatcgtcaccgac
tggcggatgatcggtaagtgcttgcggccattgccgaataagtggaaggggctcaccgat
ccggaggcccgggtgcgaacccgctacgtcgacctggcggtcaaccccgagtcgcgggag
ttgatcgcggcgcgcagcgaggtgctgcgctcggtccggcagaccctgttcgccaaggga
ttcatcgaggtcgagaccccgatcctgcagcagatccacggcggcgccaccgcccggccg
ttcgtcacgcacatcaacacctacgacatggacctgttcctgcgcatcgcgccggagctg
tatctgaagcggctgtgcgtcggcggcgtggagcgcgtcttcgagttgggccgggcgttc
cgcaacgagggggtcgacttcagccacaacccggagttcaccctgctggaggcctaccag
gcgcacgccgactatcgggtgtggatcgacgggtgccgcgagctgatccagaacgccgcc
caggccgcgcacggcgagcagaccgtgctgcggcccggcgccgacggccggctgcaaccg
gtcgacatctccgggatctgggcggtcaagaccgtgcacgacgcggtgtccgaggcactc
ggcgagcaggtcgaccccggcacgtcgctgtccaccctgcgcaaactgtccgacgcggcg
cgcatcccctaccgcgcgcactgggacgccggcgcggtggtgctcgagctctacgagcac
ctggtcgaggaccggaccgaggagccgacgttctacgtcgacttccccacctcggtgtcg
ccgctgacccggccgcaccgcagccggcccggggtcgcggagcggtgggacctggtggcc
tggggtgtcgagctggccaccgcctacagcgagctgaccgatccggtggagcagcgccgc
cgcctgcaggagcagtcgctgttagctgccggcggggatcccgaggcgatggaactcgac
gaggacttcctgcaggcgatggagtacgcgatgccgccgacgggcgggctgggcatgggc
gtcgatcgcctcgtcatgctcataacgggccgcagcatccgcgaaaccttgccgtttccg
ctggccaagccgcactag
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integrated database retrieval system
