Mycobacterium avium subsp. paratuberculosis E1: RC58_12555
Help
Entry
RC58_12555 CDS
T03787
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03030
DNA replication
mavi03410
Base excision repair
mavi03420
Nucleotide excision repair
mavi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RC58_12555
03410 Base excision repair
RC58_12555
03420 Nucleotide excision repair
RC58_12555
03440 Homologous recombination
RC58_12555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavi03032
]
RC58_12555
03400 DNA repair and recombination proteins [BR:
mavi03400
]
RC58_12555
Enzymes [BR:
mavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RC58_12555
DNA replication proteins [BR:
mavi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RC58_12555
DNA repair and recombination proteins [BR:
mavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RC58_12555
NER (nucleotide excision repair)
GGR (global genome repair) factors
RC58_12555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_2
NYN_YacP
DNA_pol_lambd_f
HHH_5
HEAT_EF3_N
Motif
Other DBs
NCBI-ProteinID:
AJK75755
LinkDB
All DBs
Position
complement(2764879..2767629)
Genome browser
AA seq
916 aa
AA seq
DB search
MRAVPATKAATKTATKTAAGAGEEQNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTN
AVYGFTAMLINLLRDEAPTHIAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKE
VLAALGITVLAEPGFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKG
VSELTRFTPEAVVEKYGLTPQQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQA
LVDNVDSVRGKVGDALREHLASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFD
DLEFRMLRDRLFETLAAVEPEVDEGFDVRGGALEAGELAVWLAEHSSGKRFGLAVAGTHL
AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLAGR
GWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLLDDTDGTDD
QAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLAGMENAGIAVDLDLLS
ELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPKTKRTKTGYTTDADAL
QSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAATGRLSSTEP
NLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDL
HSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFA
RFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA
DIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYPLDVP
LEVSVGYGRSWDAAAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
gtgagagccgtgcccgccacgaaagccgcgacgaaaaccgccaccaaaaccgccgccggg
gccggcgaggaacaaaaccggccgacactgatgctgctggacggcaactcgctggcgttc
cgggcgttctatgcgctgcccgccgagaacttcaagacccgcggcgggctgaccaccaac
gcggtctacggcttcaccgcgatgctgatcaacctgctgcgcgacgaggccccgacccac
atcgccgcggccttcgacgtgtcccggcagaccttccgctccgatcgctacccggaatac
aaggccaaccgctcggcgacccccgacgagttccacggccagatcgacatcaccaaggaa
gtcctggcggcgctgggcatcacggtgctcgccgagccgggattcgaggccgacgacctg
atcgccaccctggccacccaggccgagaacgagggctaccgggtgctggtggtcaccggc
gaccgcgactcgctgcagttggtcagcgacaacgtgacggtgctctacccgcgcaagggc
gtcagcgagctgacccgcttcacccccgaggcggtcgtcgaaaaatacgggctgaccccc
cagcagtaccccgacttcgccgccctgcgcggcgaccccagcgacaacctgcccggcatt
cccggtgtgggggagaagaccgcctccaagtggatcgccgaatacgggtcgctgcaggcg
ctggtcgacaacgtcgactcggtacgcggcaaggtcggcgacgcgctgcgcgaacacctg
gccagcgtgatccgcaaccgcgagctgaccgatctgatcaaggacgtgccgctggcccag
acgcccgacacgctgcggctgcagccctgggaccgcgaccagatccaccggctcttcgac
gacctggagttccggatgctgcgcgaccggctgttcgaaaccctggccgcggtggagcct
gaggtcgacgagggtttcgacgtgcgtggcggcgcgctggaagccggcgaactggcggtg
tggttggccgagcacagctccggcaagcgcttcgggctggccgtcgccggcacccacctg
gcctacgatgccgactgcaccgcgctggccatcgtctccgccgacggcgagggccgctac
atcgacacctcggcgctggatcccgacgacgaagccgcgctggcgtcctggttggccgac
cccggtccgcccaaggcgctgcacgaggccaagctggcgatgcacgacctggccgggcgg
ggctggacgctggccggcgtcacctccgacaccgcgctggccgcctacctggtgcggccc
ggtcagcgcagcttctccctcgacgatctcgcactgcgctatctgcgccgcgagctgcgc
gcggaaaaccctcagcagcaacagctttcgctgctggatgacaccgacggcaccgacgac
caggcggtgcagacgctgatcctgcgggcggtggcggtgctggatctggccgacgcgctc
gacgaggaactggcccgcatcaactccacctcgctgttgagcggcatggagctgccggtg
cagcgggtgctcgccggaatggaaaacgccggtatcgcagtcgatttggacttgctcagc
gagttgcagagcgatttcgcccaccagatccgcgacgcggccgaggcggcgtacgcggtg
atcggcaagcagatcaacctcggctcgccaaaacagttgcaggcggtgctctttgacgag
cttcagatgccgaagaccaaacgcaccaagaccggctacaccaccgacgcggatgccctg
cagtcgctgttcgacaagaccggccacccgttcctgcagcatctgctggcccaccgggac
gccacccggctcaaggtcaccgtcgacgggctgctcaactcggtggcctccgacgggcgc
atccacaccaccttcaaccaaaccatcgcggcgacgggccgattgtcgtcgaccgagccg
aacctgcagaacattccgatccgcaccgaggcgggccggcggatccgcgacgcgttcgtg
gtcggcgacggttatgccgagctgatgaccgccgactacagccagatcgagatgcggatc
atggcccacctgtcccaggacgccgggctgatcgaagccttcaacacgggggaggacctg
cactcgttcgtggcctcccgcgccttcggggtgcccatcgaggaggtcaccggcgagctg
cgccgccgggtcaaggccatgtcctacgggctggcctacgggctgagcgcctacgggctg
tcgcaacagctcaagatctccaccgaggaggccaaggagcagatggacgcctacttcgcc
cggttcggcggggtgcgcgactacctgcacgccgtcgtcgaacaggcccgcaaggacggc
tacacctcgacggtgctgggccgccgccggtacctgcccgagctcgacagcagcaaccgg
caggtgcgcgaagccgccgagcgggcggcgctgaatgcgcccatccagggcagcgccgcc
gacatcatcaaggtggccatgatcgaggtcgacaaggcgatcaaggaggcgggcctgcgg
tcgcggatcctgttgcaggtgcacgacgagctgctcttcgaggtcgcggccggcgagcgg
gagcagctggaagcgctggcccgcgacaagatgggcggcgcctacccgctcgacgtcccg
ctggaggtgtccgtgggctacggccgcagctgggacgctgcggcgcattga
DBGET
integrated database retrieval system
