Mycobacterium avium subsp. paratuberculosis E1: RC58_17675
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Entry
RC58_17675 CDS
T03787
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03030
DNA replication
mavi03430
Mismatch repair
mavi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RC58_17675
03430 Mismatch repair
RC58_17675
03440 Homologous recombination
RC58_17675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavi03032
]
RC58_17675
03400 DNA repair and recombination proteins [BR:
mavi03400
]
RC58_17675
Enzymes [BR:
mavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RC58_17675
DNA replication proteins [BR:
mavi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RC58_17675
DNA repair and recombination proteins [BR:
mavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RC58_17675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
PTCB-BRCT
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AJK76626
LinkDB
All DBs
Position
3831581..3832570
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AA seq
329 aa
AA seq
DB search
MSAVCWGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGV
DPGPTHVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIEL
PVDTVMCTVELARRLDLGIDNLRLETLAAHWGVTQQRPHDAFDDAMVLTGVLASALQRAR
ERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVAL
AAEVERTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQ
FLDCVRAVIGGTSMDEFTDATPDPQLALF
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggtgtgctggggtcgtccggccagcgagccggacgcgggatgggccgtcatc
gacgtcgagacctcgggctttcgcccgggtcaggctcgcatcatcagccttgcggtgctc
gggctggacgccggcggcaaggtcgagcagtcggtggtgagcctgctcaacccgggcgtg
gatccgggccccacccacgtgcacggcctgaccgccgccatgctggaagaccagccgcag
ttcgccgacatcgcgggcgacgtggtcgaggtgctgcgcggccgcaccctggtcgcccac
aacgtggccttcgactacgccttcctcgccgccgaggccgaactcgccggcatcgaactt
cccgtcgacaccgtgatgtgcacggtcgagctggcccggcggctggacctgggcatcgac
aacctgcggctggagacgctggcggcgcactggggcgtgacccagcagcggccgcacgac
gccttcgacgacgccatggtgctgaccggcgtgctggcctcggcgctgcagcgggcccgg
gaacgcgacatctggctgccggtgcatccggtgacccggcgccgctggcccaacggccgg
gtcacccacgacgagctgcgcccgctgaaggtgctggcctcccggatgccctgcccctat
ctcaacccgggcccctacgtgggcggccgaccactcgtccagggcatgcgcgtcgcgctg
gccgccgaggtcgagcgcacgcacgaggaactcgtcgagcggatcctgcacgccgggctg
gcctacagcgacaccgtggaccgggagacctcgctggtggtgtgcaacgaccccgccgcc
gagcacggcaaaggctatctggcccggcaattgggggtgccggtgatctccgacgcgcag
tttttggactgcgttcgcgccgtcatcggcggcaccagcatggacgagttcaccgacgcc
acgcccgatccgcagctggcgttgttctga
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