Mycobacterium avium subsp. avium: MAA44156_03217
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Entry
MAA44156_03217 CDS
T10718
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mavm Mycobacterium avium subsp. avium
Pathway
mavm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mavm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MAA44156_03217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mavm03400
]
MAA44156_03217
Enzymes [BR:
mavm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MAA44156_03217
DNA repair and recombination proteins [BR:
mavm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MAA44156_03217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
RapZ-like_N
Motif
Other DBs
NCBI-ProteinID:
QGW33401
LinkDB
All DBs
Position
complement(3475391..3477691)
Genome browser
AA seq
766 aa
AA seq
DB search
MNAPRAWPAEPTATPRVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRK
RWPNGVDQESFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTRSRAEELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFP
LTSGSKGLHLYTPLTEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWS
QNNGSKTTIAPYSLRGRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDA
SDNQTPVPDRLTKYRSMRDASKTPEPVPAAKPAAGRGNTFVIQEHHARRLHYDFRLERDG
VLVSWAVPKNLPDTPAVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEK
FQDDEVIVNLHGRKISGRYALIQTEGDQWLAHRMKDQNVFDFDTIAPMLATHGSVSALKA
SQWAFEGKWDGYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVV
LDKRGVPNFHEMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGDLTVP
ELLPGDGDQALRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGE
GGRSSGIGSLLMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSE
AKGVTFVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgcgcgcttggcccgctgagccgacagcgacgccgcgggtgaaactgacc
aacgccgacaaggtgctctatcccgcgacgggaaccaccaaagccgacgtcttcgactac
tacacgcggatcgccgacgtgatgatcccgcacatcgccgggcgtccggtcacccggaag
cgctggcccaacggcgtcgatcaggaatcgttcttcgagaagcagctggcctcctcggca
ccggactggctgccgcgcgccagcgtgacccaccgatccggcacgacgacctatccgatc
atcgacagcgccaccggcctggcctggatcgcccagcaggcggcgctggaggtgcacgtg
ccgcagtggcggttcgtcgcggagtggacccgaagccgggccgaagaactcaaacccggc
ccggcgactcgactggtgttcgaccttgacccgggcgaaggcgtgacgatggcccagctc
gccgaggtggcgcgcgccgtccgcgacctgatcgatgggatcgggctgcagacgtttccg
ctcaccagcggcagcaagggactgcacctgtacacgccgctgacggagccggtgagcagc
aaaggcgccaccgtgctggccaaacgcgttgcgcagcaactggaaaagactatgccgaag
ctggtcacgtcgaccatgaccaagagcctgcgggcgggaaagatctttgtggactggagc
cagaacaacggctccaagacgaccatcgcgccctattcgctgcgcgggcgcgaccacccc
accgtcgccgcgccgcgcacctgggacgaactcgacgacccggcgctgcgtcacctgcgc
tacgacgaagtgctgacccgggtcgcccgcgacggtgacctgctcgccgagctggacgcc
tccgacaaccagacaccggtgccggaccgcctgaccaaataccgcagcatgcgcgacgcc
tccaaaacgcccgagccggttccggccgcgaaacctgctgcgggacgaggcaataccttc
gtcatccaagagcaccacgcccggcggctgcactacgacttccggctggagcgcgacggg
gtgctggtgtcctgggcggtgccgaagaacctgcccgacacccccgcggtgaatcacctg
gccgtacacaccgaggatcacccgctggaatacggcgggttcgagggcgtcatccccaaa
ggcgaatacggggcgggcagggtggtcatctgggactccggaacctatgacgccgagaag
ttccaggacgacgaggtgatcgtcaacctgcacggccgcaagatctccgggcgctacgcg
ctgatccagaccgagggcgaccaatggctggcgcaccggatgaaggaccagaacgtcttc
gacttcgacacgatcgccccgatgctcgccacccacggttcggtgtcggcgctcaaggcg
agccagtgggcgttcgagggcaaatgggacggctaccggctactggtcgaggccgaccac
ggcaccctgcgggtgcggtcccggcgcggtcgcgaagtcaccggtgagtaccgcgaatta
cgctcgctggcaaaggctctcgaggagcaccacgcggtgctcgacggcgaggccgtggtg
ctggacaagcgcggcgtgcccaacttccacgagatgcaaaaccgcggcaagagcgcgcgg
gtcgaattctgggcgttcgacctgctctacctcgacggccgctcgctgctgcgggcccgc
taccgcgatcggcgaaaactgttggaaatgctggcctccggcggtgatctgaccgttccc
gagctgctgcccggcgacggcgaccaagcgctgcggcagtccgccgagcgcggttgggag
ggcgtgatcgccaagcggcgcgactccacctatcagccgggccggcgctcgtcctcctgg
atcaaggacaagcattggaacacccaggaagtcgtgatcggcggctggaaggccggggaa
ggcggacgcagcagcggcatcggttccctgctgatgggcattccgggcccgggcggcctg
cacttcgccggccgtgtcggcaccgggttcaccgaacgcgacctggccaacttgaagaag
acgctggccccgctgcgcaccgaccaatcgcccttcgatgcgccgcttccccgcagcgag
gccaagggcgtcacgttcgtcgagccggtgctggtgggcgaggtgcgctacagcgagtgg
acaccggatgaccggctgcgccaatcgagttggcgcgggctgcggccggacaaggaggca
agcgaggtggtacgcgagtga
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integrated database retrieval system
