KEGG   Mycobacterium avium subsp. paratuberculosis E93: RE97_01800
Entry
RE97_01800        CDS       T03847                                 
Name
(GenBank) RNA polymerase sigma factor SigF
  KO
K03090  RNA polymerase sigma-B factor
Organism
mavu  Mycobacterium avium subsp. paratuberculosis E93
Brite
KEGG Orthology (KO) [BR:mavu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mavu03021]
    RE97_01800
Transcription machinery [BR:mavu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RE97_01800
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 HTH_23 HTH_Crp_2 Sigma70_ECF HTH_3 HTH_24 MarR MarR_2 DUF7343 Peptidase_inhib_put HTH_IclR HTH_ParB KORA DksA-like_N HTH_31
Other DBs
NCBI-ProteinID: AJK78049
LinkDB
Position
424078..424866
AA seq 262 aa
MTARAAGGSVSRPNEYADVPDMFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEG
RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSE
EEEVRAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG
ISQMHVSRLLAKSLTRLRDQLQ
NT seq 789 nt   +upstreamnt  +downstreamnt
gtgacagcgcgagctgccggcggttcggtttctcgcccgaacgaatacgccgatgtcccg
gacatgttccgtgagttggccactgccgagcccgactcgatggagtttcagcgtcaacgg
gacaagatcgtcgagcggtgcctgccgctggccgaccacattgcgcgccgcttcgagggc
cgcggcgagccccgcgacgacctggttcaggtggcccgggtcggcctggtcaacgcggtg
gtccggttcgacgtcgacgccggctcggacttcgtctcgttcgcggtgcccaccatcatg
ggtgaggttcgccggcacttccgggacaacagctggtcggtgaaggtgccgcggcggctc
aaggagctgcacctgcggctgggcaccgcgaccgccgacctgtcgcagcggctgggccgg
gcgccgaccgcgaccgagctggccgcggagctggagatggaccgcgaagaggtggtcgag
gggctggtcgccggcagctcctacaacaccttgtccatcgacagcggcggcggcagcgaa
gaggaggaagtgcgcgcgatcgccgacacgctgggcgacgtggacaccgggctggaccgg
atcgaggaccaggagtcgctgcggccgttgctcgaggcgctgcccgaacgcgaacgcacc
gtgctggtgttgcggttcttcgagtcgatgacccaaacccagatcgccgagcgggtgggc
atctcgcagatgcacgtgtcgcggctgctggccaagtcgctaacgcggcttcgtgaccaa
ttgcagtag

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