Mycobacterium avium subsp. paratuberculosis E93: RE97_03970
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Entry
RE97_03970 CDS
T03847
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Pathway
mavu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RE97_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_03970
Enzymes [BR:
mavu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RE97_03970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RE97_03970
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RE97_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
NFACT_N
Auto_anti-p27
DUF5830
Motif
Other DBs
NCBI-ProteinID:
AJK78426
LinkDB
All DBs
Position
871287..872138
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AA seq
283 aa
AA seq
DB search
MPELPEVEVVRRGLHAHVVGKTIGAVRVHHPRAVRRHEAGPADLTARLLGARITGTDRRG
KYLWLLLDGCDTALVVHLGMSGQMLLGAVPRAEHVRISALLDDGTVLSFADQRTFGGWML
ADLLEVDGSILPRPVAHLARDPLDPRFDAAAVVKVLRRKHSEIKRQLLDQQVVSGIGNIY
ADEALWRAKVHGARIAATMTGRQLTAVLDAAAEVMRDALAQGGTSFDSLYVNVNGESGYF
DRSLDAYGREGESCRRCGAVMRREKFMNRSSFYCPKCQPRPRL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagtcgaggtggtgcgccgcggcctgcacgcgcacgtggtgggc
aagacgatcggcgcggtgcgggtgcatcacccccgcgcggtgcgccgccacgaagccggc
cccgccgacctcaccgcccggctgctgggcgcgcggatcaccggcaccgaccggcgcggc
aagtacctgtggctgctgctggacggctgcgataccgcgctggtggtgcacctgggcatg
agcgggcagatgctgctcggcgcggtgccgcgcgccgagcacgtccgcatctcggcactg
ctcgacgacggcaccgtgctgagcttcgccgaccaacgcaccttcggcggctggatgctc
gccgaccttctcgaggtggacggcagcatcctgccccggcccgtcgcgcacctggcgcgc
gacccgctcgatccccgcttcgacgccgccgcggtggtaaaagtgttgcggcgcaagcac
tccgaaatcaagcgacagctgctcgatcagcaggtggtgtccgggatcggcaacatctac
gccgacgaggcgctgtggcgggccaaggtgcacggcgcccggatcgccgccacgatgacc
ggcaggcagctgaccgccgtgctggacgccgccgccgaggtgatgcgcgacgcgctggcc
cagggcggaacctcgttcgattcgctgtacgtcaacgtcaacggcgaatccgggtacttc
gaccgatcgctggacgcctacggccgggagggcgaaagctgccggcgctgcggcgcggtg
atgcgccgggagaagttcatgaaccgctcgtcgttctactgcccgaaatgccaaccgcgc
ccgcggctttga
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