Mycobacterium avium subsp. paratuberculosis E93: RE97_04875
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Entry
RE97_04875 CDS
T03847
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RE97_04875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mavu03021
]
RE97_04875
Transcription machinery [BR:
mavu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RE97_04875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AJK78594
LinkDB
All DBs
Position
complement(1052999..1054489)
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AA seq
496 aa
AA seq
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MKRTATKSPSSPAKRPAAKAANGSAPAKRATKTASRSAKSEAGAAAEPAKKTRSSAKGAD
AKAPSARGTKAAKGGPADPDALDTDGAVEDLDTEPDLEGEPGEDLDIDTDLNLDDLEEDV
AADDADIEPGDAEEGEDEEAAAPKAAGATVADEDDEIAEPSEKDKASGDFVWDEDESEAL
RQARRDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMSEMAERGEK
LPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAV
EKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGR
EPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVS
FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMS
KLRHPSRSQVLRDYLD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaccgccacaaagtctccgtcgtcccccgccaagaggccggcggccaaggcc
gccaatggctccgcgcccgccaagcgggccaccaagaccgcatcgcggtccgccaagtcc
gaggccggcgcggcggccgaacccgccaagaagacccgctcgtcggccaagggtgccgac
gccaaggcgccgtcggcgcgcgggacgaaggcggccaagggcggcccggccgatcccgac
gccctcgacaccgacggcgccgtcgaggatctcgacaccgaacccgacctcgagggcgag
cccggcgaggacctcgacatcgacaccgacctgaacctcgacgacctcgaggaggacgtg
gcggccgacgacgccgacatcgagcccggtgacgccgaggagggcgaggacgaggaagcc
gccgcccccaaggctgccggcgccacggtcgccgacgaggacgacgagatcgccgagccg
tccgaaaaggacaaggcctccggcgatttcgtctgggacgaggacgaatccgaggcgttg
cggcaggcccgcagggacgccgagctgaccgcgtcggccgactcggtgcgcgcctacctc
aagcagatcggtaaggtcgcgctgctcaacgccgaggaagaggtcgagctggccaagcgg
atcgaggccggcctgtacgccacccagctgatgtcggagatggccgagcgcggcgagaag
ctgcccgccgcccagcgccgcgacatgatgtggatctgccgcgacggcgaccgcgcgaaa
aaccatctgctggaagcgaatctgcggttggtggtgtcgctggccaagcgctacacaggc
cgcgggatggcgttcctcgatttgatccaggagggcaacctgggcctgatccgtgcggtc
gagaagttcgactacaccaagggctacaagttctccacctacgcgacgtggtggatccgt
caggccatcacccgggccatggccgaccaggcccgcaccatccgcatcccggtgcacatg
gtcgaggtgatcaacaagctgggccgcattcagcgcgagctgctgcaggacctgggccgc
gagcccacgcccgaggagctggccaaggaaatggacatcacgcccgaaaaggtgctcgag
atccagcaatacgcgcgcgagccgatctcgctggaccagacgatcggcgacgagggcgat
tcccagctgggcgacttcatcgaggacagcgaggccgtggtggccgtcgacgcggtgtcg
ttcacgctgctgcaggaccagctgcagtcggtgctggagacgctgtcggagcgcgaggcc
ggcgtggtgcggctgcggttcggcctgaccgacggccagccccgcaccctggacgagatc
ggccaggtctacggggtgacccgcgagcgcatccgccagatcgagtccaagacgatgtca
aagttgcgccaccccagccgttcccaggtgctgcgcgactacctggactga
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