Mycobacterium avium subsp. paratuberculosis E93: RE97_17125
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Entry
RE97_17125 CDS
T03847
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavu03032
]
RE97_17125
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_17125
Enzymes [BR:
mavu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RE97_17125
DNA replication proteins [BR:
mavu03032
]
Prokaryotic type
DNA Topoisomerases
RE97_17125
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RE97_17125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AJK80742
LinkDB
All DBs
Position
complement(3721900..3724698)
Genome browser
AA seq
932 aa
AA seq
DB search
MADPKLKENTSGGNGSRRRLVIVESPTKARKLASYLGSRYIVESSRGHIRDLPRAAADVP
AKYKSEPWARLGVNVDADFEPLYIISPEKKHTVSELKGLLKDVDELYLATDGDREGEAIA
WHLLETLKPNIPVKRMVFHEITEPAILEAAENPRDLDIDLVDAQETRRILDRLYGYEVTP
VLWKKVAPKLSAGRVQSVATRIIVQRERDRMAFRSASYWDIVAQLDASVSDPQASPPTFA
ARLTSVDGLRVATGRDFDSQGQLRKADEVIVLDEPQATELAAGLQGAQLSVASVEEKPYT
RRPYAPFMTSTLQQEAGRKLRFSAERTMSIAQRLYENGYITYMRTDSTTLSGSAINAART
QARQLYGEEYVSPSPRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGDEFRLYELI
WQRTVASQMADARGTTLSLRIGGQAGDRQVVFSASGRTITFAGFLKAYVETVDELAGGEA
DDAESRLPQLTQGQRLDAIELTPDGHATNPPPRYTEASLVKALEELGIGRPSTYSSIIKT
IQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDAIASGQERRTDW
LNNFYFGGEHGVADSIARSGGLKKLVGVNLEGIDAREVNSIKLFDDEQGRPVYVRVGKNG
PYLERMVTGDDGEPTPQRANLNDSLTPDELTLEVAEQLFATPQEGRVLGVDPATGHEIVA
KDGRYGPYVAEVLPEPPPDDDDGSGAPAKKGKKPTGPKPRTASLLRTMDLQTVTLEDALR
LLSLPRVVGVDPETGEEITAQNGRYGPYLKRGNDSRSLASEEQLFDITLEEALKIYAEPK
RRGRQGAAAPPLRELGADPATGKPMVIKDGRFGPYVTDGETNASLRKGDDVMSLTDQRAA
ELLADRRARGPAKRTAKKTSRKAPAKKAAKRG
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
ttggctgacccgaaactgaaggaaaacaccagcggcgggaacggcagccgccggcgactc
gtgatcgtcgagtcgcccaccaaggcgcgcaaactggccagctacctgggctcgcggtac
atcgtcgagtcgtcgcgcgggcacatccgcgacctgccccgggccgcggccgacgtgccg
gcgaaatacaagtcggagccgtgggcgcggctcggcgtgaacgtcgacgccgacttcgag
ccgctgtacatcatcagcccggagaagaagcacaccgtcagcgagctcaagggcctgctc
aaggacgtcgacgagctctacctggccacggacggcgaccgcgagggcgaggccatcgcc
tggcacctgctggaaaccctcaaacccaacattccggtcaagcggatggtgttccacgag
atcaccgagccggccatcctggaggccgccgagaaccctcgcgacctggacatcgacctg
gtcgacgcgcaggagacccggcgcatcctggaccggctgtacggctacgaggtcaccccg
gtgctgtggaagaaggtcgcgcccaagctgtcggcgggccgggtccagtcggtggccacc
cggatcatcgtgcagcgcgagcgcgaccggatggcgttccgcagcgcgtcctactgggac
atcgtggcccagctggacgccagcgtgtccgacccccaggcctccccgcccaccttcgcg
gcccggctgaccagcgtagacggcctgcgggtggcgaccgggcgggacttcgactcgcag
ggtcagctgcgcaaggccgacgaggtgatcgtgctcgacgagccccaggcgaccgagctg
gccgccgggctgcagggcgcccagctgtcggtggcctcggtggaggaaaagccctacacc
cgccggccgtacgcgccgttcatgacgtcgacgctgcagcaggaggccggccgcaagctg
cggttctccgccgagcgcaccatgagcatcgcccagcggctctacgagaacggctacatc
acctatatgcgtaccgactcgaccacgctgtcgggttcggccatcaacgccgcgcgcacc
caggcgcgtcagctctacggcgaggagtacgtctcgccgtcgccgcgccagtacacccgc
aaggtgaagaacgcgcaggaggcgcacgaggcgatccgtccggccggcgagacgttcgcc
accccggacgcggtgcgccgcgagctcgacggcgacgagttccggctctacgagctgatc
tggcagcgcacggtggcctcccagatggccgacgcgcgcggcaccacgctgagcctgcgg
atcggcggccaggccggggaccggcaggtggtgttctccgcgagcgggcgcaccatcacc
ttcgcgggttttttgaaggcctacgtggagaccgtcgacgagctggccggcggcgaggcc
gacgacgccgagagccggctgccgcagctgacccagggccagcggctggacgccatcgag
ctcacccccgacggccacgccaccaacccgccgccgcgctacaccgaggcgtcgttggtc
aaggcgctcgaggagctgggcatcggccgcccgtcgacctactcgtcgatcatcaagacc
atccaggaccgcggctatgtgcacaagaagggcagcgccctcgtgccgtcctgggtcgcg
ttcgccgtcaccggtttgctggagcaacatttcggccggctggtggactacgacttcacc
gccgcgatggaagacgagctggatgcgatcgcctcgggccaggagcggcgcaccgactgg
ctgaacaacttctacttcggcggcgagcacggcgtggccgactcgatcgcccgctccggc
ggcctgaagaaactcgtcggcgtcaacctggagggcatcgacgcccgagaagtcaactcc
atcaagctctttgacgacgagcagggccgccccgtctacgtccgggtgggcaagaacggg
ccctacctggagcggatggtgaccggcgacgacggcgagcccaccccgcagcgggccaac
ctcaacgactcgctgacccccgacgagctcaccctcgaggtggccgagcagctgttcgcc
acgccgcaggagggccgggtgctgggggtggatccggcgaccggccacgagatcgtcgcc
aaggacggccgttacgggccgtatgtggccgaggtgctgcccgagccgccgcccgacgat
gacgacggcagcggcgcgcccgccaagaagggcaagaagcccaccgggcccaagccgcgc
accgcgtcgctgctgcgcaccatggacctgcagacggtcaccctcgaggacgcgctgcgc
ctactctcgctgccccgggtggtgggggttgaccccgagaccggtgaggagatcaccgcg
cagaacggccgctacggcccatacctgaagcgcggcaacgactctcgctcgctggcctcc
gaggagcagctgttcgacatcaccctcgaggaagcgctgaagatctacgccgagcccaaa
cgccgcggccggcagggcgccgccgcgccgccgctgcgggagctgggcgccgatccggcg
accggtaagccgatggtgatcaaggacggccggttcgggccgtacgtcaccgacggcgag
acgaacgcgagcctgcgcaagggcgacgacgtcatgtcgctcaccgaccagcgcgccgcc
gagctgttggccgaccgcagggcgcgcggcccggcgaagcggaccgccaagaaaaccagc
cgcaaggccccggccaagaaggcggccaagcgcggttag
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