Mycobacterium avium subsp. paratuberculosis E93: RE97_21190
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Entry
RE97_21190 CDS
T03847
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Pathway
mavu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RE97_21190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mavu03021
]
RE97_21190
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_21190
Enzymes [BR:
mavu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RE97_21190
Transcription machinery [BR:
mavu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RE97_21190
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RE97_21190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJK81439
LinkDB
All DBs
Position
4564344..4568294
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYS
PAAKDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcgcatgggccacatcgagttggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcgattgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacgtccgtcgac
gaggagatgcggcacaacgagctctccaccctcgaggccgagatgatggtggagcgcaag
gccgtcgaggaccagcgcgacgccgacctggaggcccgcgcccagaagctggaggccgac
ctggccgagttggaagccgagggtgccaaggccgacgcgcggcgcaaggtccgcgacagc
ggcgagcgggagatgcgccagatccgcgaccgcgcccagcgcgagctggaccggctggag
gacatctggaacaccttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagcagctgcgtgacgtc
atccgaaacggcaaggggcagaagaagcttcgcgccctcaagcggctcaaggtggtcgcc
gcgttccagcagagcggcaactcgccgatgggcatggtgctcgacgccgtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgccggggccgcccggtcaccgggccgggcaaccgcccgctgaag
tcgttgagcgacctgctcaagggcaagcagggccggttccggcagaacctgctcggtaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgttggagttgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgccagcgt
ccgcaggtgtgggacgtgctggaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccggttgggcatccaggccttcgagccgatgctggtggagggcaag
gcaattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgttgagcgccgaggcccaggccgaggcccgcatcctgatgctg
tcctccaacaacatcctgtcgcccgcgtcgggccggccgctggccatgccgcgactggac
atggtgaccgggctgtactacctgaccaccgaggtcgaaggcgacaagggcgaatactcg
ccggccgcgaaggatcgtccggagacgggtgtgtactcctcgccggccgaggccatcatg
gccgccgaccgcggggtgctctcggtgcgggccaagatcaaggtgcggctgacccagttg
cgtccgcccgccgagatcgaggccgagctgttcggcgccaacggctggcagccgggcgac
gcctggatggccgagaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggcgtcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgccggc
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtgttggttccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggccgagaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgcgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggcgccaccggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacgcacggcgctcgaaagggcttg
gcggacaccgcgttgcgtactgccgactcgggttatctgacccgtcgtctggtggacgtc
agccaggacgtcatcgtgcgcgagcacgactgcgagaccgagcggggcatcgtcgtcgaa
ctggccgagcgtcagcccgacggcaccctgatccgtgacccgtacatcgaaacctcggcg
tacgcacggactttgggcaccgacgcggtcgacgaggccggcaacgtcatcgtcgcccgc
ggcgaggacctcggtgacccggagatcgacgccctgctggcggccggcatcacgtcggtc
aaggtgcgctcggtgctgacctgcaccacgggcaccggcgtgtgcgcgacctgctacggc
cggtcgatggccaccgggaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcc
cagtccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgggtgcaggagctgttcgaggcccgcatcccg
cgcggtaaggcgccgatcgccgacgtcaccgggcgggtccgtctcgaggacggtgagcgc
ttctacaagatcaccatcgttcccgacgacggcagcgaagaggtcgtctacgacaagctg
tccaagcggcagcggctgcgcgtgttcaagcacgaggacggctccgagcgggtgctctcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgtgtgcagggcccgcgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcacagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagttcctgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gcggccgggcgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgacgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcgggaagctgatcccggcc
ggtaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggtgccgctggacgactacggctacagcgactaccgctag
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integrated database retrieval system
