Methanomethylophilus alvi: MMALV_01710
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Entry
MMALV_01710 CDS
T02624
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
max
Methanomethylophilus alvi
Pathway
max03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
max00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMALV_01710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
max03019
]
MMALV_01710
Messenger RNA biogenesis [BR:
max03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MMALV_01710
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MMALV_01710
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
ECR1_N_2
S1
DUF5029
HypA
Zn_Tnp_IS91
DUF3781
Zn_ribbon_6
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AGI84927
UniProt:
M9SH91
LinkDB
All DBs
Position
complement(149961..150518)
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AA seq
185 aa
AA seq
DB search
MTDRQVLPGDEIAVEEEYVSSDGTYVRDGKIYASQLGTLVLDDNESIAKVVSPNPPNILK
EGDIIYATIDDTRKTMATATALVAEGNRRAIASSTDATLHVSKISPDYTDNVGDEVRKGD
LIRARVISTKPSLQLTTKDVHLGVVRAQCGMCKTELERKGKNLYCPKCRRSQPRKLADDY
GDVKI
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagacaggttcttccgggcgacgagatcgcagtcgaggaggagtacgtatcc
tccgacggcacatacgtcagggacgggaagatctacgcatcccaactggggacactcgtt
ctggacgacaacgagagcatcgctaaggtcgtctccccgaatccccccaacatcctgaag
gagggggacataatctatgccaccatcgacgatacgaggaagaccatggccacggccacg
gcactcgtggcagagggcaataggagggccatagccagcagcaccgacgccaccctccat
gtatccaagatatcccccgactacaccgacaacgtaggcgacgaggtgagaaagggggac
ctcatacgcgcccgcgtcataagcaccaagccttcccttcagctcaccaccaaagacgta
cacctcggggtcgtccgcgcacaatgcggcatgtgcaagaccgaactggagaggaaaggg
aagaacctgtactgccccaagtgcaggcgttcgcaacccaggaagctggcggacgactac
ggggacgtgaagatatga
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