Methanomethylophilus alvi: MMALV_08560
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Entry
MMALV_08560 CDS
T02624
Name
(GenBank) DNA repair helicase Rad3 related protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
max
Methanomethylophilus alvi
Pathway
max03022
Basal transcription factors
max03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
max00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MMALV_08560
09124 Replication and repair
03420 Nucleotide excision repair
MMALV_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
max03021
]
MMALV_08560
03036 Chromosome and associated proteins [BR:
max03036
]
MMALV_08560
03400 DNA repair and recombination proteins [BR:
max03400
]
MMALV_08560
Enzymes [BR:
max01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MMALV_08560
Transcription machinery [BR:
max03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MMALV_08560
Chromosome and associated proteins [BR:
max03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MMALV_08560
DNA repair and recombination proteins [BR:
max03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MMALV_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
ResIII
DEAD
nSTAND3
ATPase
AAA_19
AAA_30
Helicase_C
Terminase-T7_RNaseH-like
T2SSE
Asparaginase_C
Motif
Other DBs
NCBI-ProteinID:
AGI85593
UniProt:
M9SHG1
LinkDB
All DBs
Position
complement(832392..834287)
Genome browser
AA seq
631 aa
AA seq
DB search
MKAPYLPYEPRPSQLQIISDIRTALDQSRHIVIESGTGTGKTITSLAGALEHAKPRGKKV
VYITRTISQSDQVMKELRAISTLKPVYGITLTGRNKSCPLLQARPDFESLSPSALSTLCS
DRKAKSQQNRPGGCPFFEETQHNLETVEAYCKKNFPKSDELDVYCRNINVCPYEAKKALM
KDFDVVVAPYIHIIDPDIRENFLSNLDTDEKGIVLIVDEAHNIMDAVREQESFSITTRLV
MSALDEAGLFKKPEVCDGVTIDAFIRSVRAAMRDIGSKYLGFNEKEKVIPADSLENSVCT
ALNIDRMQLTAAINRTIELGEKREEAIADTDAPSSPVLEFGRLMEAWVKSPADRYVRAVR
SNEDGEYLTASCIDPTDIVRFMNALPGAVHMSGTLQPLAQYARVMGLPSNSVPRTYPSPF
PAENKLVVYAKDVTTNYNDLKANPSMWSKIERMTAQMCNAVDKNILVFLPSYRLMKDIRP
YMEQSVDKPLYWEESGRQRNTMRSLEAFRRGRNGVFFCVMGGSVAEGMDFPGEELCFAII
IGMPYPPPTIEMKAMKDMFDARYGSGMGWKYTSEIPAVRKIRQAIGRLIRTETDRGMAVI
LDNRASRNARQLEAVPSDDPVSDAVRFFSKK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccccgtacctcccgtacgagccgagaccgtcccagctgcagatcatatcggac
atacgcacggcattggaccagtcgagacacatagtcatagagtccgggaccgggacaggg
aagaccatcacgtccctcgcaggcgccctggaacatgccaaaccccgcgggaagaaggtc
gtctacatcaccaggacgatatcccaatcggaccaggttatgaaggagctccgcgccata
tccaccttgaaacccgtgtatgggatcaccctcaccggaaggaacaagtcgtgccccctc
ctgcaggcgagaccggacttcgaatccctctccccgagcgccctctccaccctgtgctcg
gacaggaaggcgaagagccagcagaacagaccgggaggatgccccttcttcgaggagacc
cagcacaacctggagacggtggaggcctactgcaagaagaacttccccaaatcggacgag
ctggacgtctactgcaggaacatcaacgtgtgcccctatgaggccaagaaggcgctgatg
aaggacttcgacgtggtggtggcaccgtacatccacataatcgaccccgacatccgcgag
aacttcctttccaatctggacaccgacgagaaagggatagtcctgatagtggacgaggca
cacaacataatggacgcggtccgcgagcaggaaagtttctccataaccacccgtctcgtc
atgtccgccctcgacgaggccggactgttcaagaagccggaggtctgcgacggagtcacc
atcgatgcgttcatccggtccgtcagggcggccatgagggacatagggtccaagtatctc
gggttcaacgagaaggagaaggtcatacccgccgattccctcgagaacagcgtgtgcacc
gcattgaacatcgaccgcatgcagctgacggcggcgataaacaggaccatcgagctgggg
gagaagagggaggaggccatcgccgacaccgatgcgccgtcgtcccccgtcctggagttc
ggaaggctcatggaggcatgggtcaagagtccggccgaccgctacgtcagggccgtcagg
tccaacgaggacggcgagtacctcaccgcctcctgcatagaccctaccgacatagtgagg
ttcatgaatgcgctcccgggcgcggtccacatgtcggggacactgcagcctctggcacag
tatgcccgcgtgatggggctgccgtccaattccgtaccgcgcacctatccctcccccttc
ccggcggagaacaagctggtcgtctacgccaaggacgtgaccaccaactacaacgacctg
aaggcgaacccgtccatgtggagcaagatcgagcgcatgacggcgcagatgtgcaacgcc
gtggacaagaacatcctcgtcttcctcccgtcctaccgtctgatgaaggacatccgcccg
tacatggaacagtccgtggacaaacccctgtactgggaggagtccggccgccagaggaac
accatgaggtccctcgaggcgttcaggagaggaaggaacggggtgttcttctgcgtcatg
gggggatcggtggccgagggaatggacttcccgggggaggagctgtgcttcgccatcatc
atagggatgccctatcccccgcccaccatcgagatgaaggccatgaaggacatgttcgac
gcccgttacgggtccggcatggggtggaaatacaccagcgagatccccgccgtcaggaag
ataaggcaggccataggccgtctcatcaggacggagaccgaccgcgggatggccgtcata
ttggacaaccgggcatccaggaacgcaaggcagctggaggccgtaccctccgacgacccg
gtatccgatgcggtaaggttcttctccaaaaaatga
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