Methanomethylophilus alvi: MMALV_10990
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Entry
MMALV_10990 CDS
T02624
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
max
Methanomethylophilus alvi
Pathway
max03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
max00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMALV_10990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
max03019
]
MMALV_10990
03009 Ribosome biogenesis [BR:
max03009
]
MMALV_10990
Enzymes [BR:
max01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMALV_10990
Messenger RNA biogenesis [BR:
max03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMALV_10990
Ribosome biogenesis [BR:
max03009
]
Prokaryotic type
rRNA helicases
MMALV_10990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AGI85833
UniProt:
M9SI93
LinkDB
All DBs
Position
1094214..1095629
Genome browser
AA seq
471 aa
AA seq
DB search
MISKFLDLGIAENVAKAIDEMGWEEPSPIQEAAIPAGLKGYDLIAQAQTGTGKTGTFGSV
ILSTIPSGQKVPSAIVLEPTRELAVQVSEELGKMSDFSGHVCVPIYGGASIERQVDELEE
GVDIIAGTPGRVKDMIEREYLDLSRIKVIVMDESDRMLDMGFIDDIEFIFKQCPADRQML
MFSATMPEDIKRLATDYMKKPKEINVSQDEVVLDLIKEYYISVGRRNKSWALTRILDIDE
PKALIFCQTIKMVDILEQRLKEHHYKVEALHGDMPQKKRERVVDDFKEGETDLLIATDVA
ARGLDIDDISYVINYDMPDDIHTYIHRIGRTGRAGREGTAVSFVTSEEEYLIREFELRTG
MKIEKRDVPEAEEGSKDTIRKVTDYDQLSDPFGMVMFEVGLGKADGIGKVKLADYIMRAG
RIIDAAIGKIKIGEESSTVEVHKDFGNRMLMDVPKMRYRGKKVSVKVLERD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgaagttcttggatctcggcatagccgagaacgtggcaaaagcgatagacgag
atgggctgggaagaaccttcgcccatacaggaggcggcgatccccgccggactgaaggga
tacgacctcatagcccaggcacagaccggtaccgggaagaccggaaccttcggctcggtg
atactcagcaccatacccagcggacagaaggtcccgtccgccatcgtcctcgaacccacc
agggagttggccgtccaggtctccgaggaactcggaaagatgtccgacttcagcggacac
gtatgcgtccccatctacggaggggcgagcatagagaggcaggtcgacgagttggaggag
ggcgtggacatcatagcgggtacccccggccgcgtcaaggacatgatcgagagggaatat
ctggatctgtccaggataaaggtgatcgtcatggacgagtcggaccgcatgctcgacatg
ggtttcatcgacgacatagaattcatattcaaacagtgcccggccgacaggcagatgctc
atgttctccgccaccatgccggaggacataaagaggctggccaccgattacatgaaaaag
cccaaggagatcaacgtctcccaggacgaggtcgtcctcgacctcatcaaggaatactac
atctccgtcggaaggaggaacaaatcctgggcactcaccaggatcctcgacatagacgaa
cccaaggccctgatattctgtcagaccatcaagatggtcgacatcctggaacagaggctg
aaggagcaccactacaaggtggaggccctccacggggacatgccccagaagaagagggag
agggtcgtggacgacttcaaggaaggcgagaccgacctgctgatcgccaccgacgtcgcc
gccaggggactggacatcgacgacatatcgtatgtcatcaactacgatatgccggacgac
atccacacctatatccacaggatcggcaggaccgggcgtgcaggcagggaagggacggcc
gtatcgttcgtcacctccgaggaggaatacctgatccgcgagttcgaactgaggaccggc
atgaagatcgagaagagggacgttccggaagcggaggaagggtccaaggacaccatccgc
aaagtaaccgactacgaccaactctcggaccccttcgggatggtgatgttcgaggtcggc
ctcgggaaggcggacggcatcggcaaggtgaaactggccgactacatcatgcgtgcgggc
aggataatcgacgccgccatcggcaagataaagatcggggaggagagctccaccgtcgag
gtccacaaggacttcggcaacaggatgctcatggacgtccccaagatgagataccgtgga
aagaaggtctcggtgaaggtcctggagagggactga
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