Methanosarcina barkeri Fusaro: Mbar_A0145
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Entry
Mbar_A0145 CDS
T00271
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbar_A0145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mba03019
]
Mbar_A0145
03009 Ribosome biogenesis [BR:
mba03009
]
Mbar_A0145
Enzymes [BR:
mba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mbar_A0145
Messenger RNA biogenesis [BR:
mba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mbar_A0145
Ribosome biogenesis [BR:
mba03009
]
Prokaryotic type
rRNA helicases
Mbar_A0145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAZ69130
UniProt:
Q46G62
LinkDB
All DBs
Position
1:complement(162863..164602)
Genome browser
AA seq
579 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRM
LKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKILA
ALLKYSFKEMFDESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFIQEETGVSD
LKIRDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSKRRSSKSADEYRGG
TRNGSRSYSRNDSWNGSRNTNSKSYTRDTRTAKKKYSSY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcattggggctttcagacagtatgttaaaagccctt
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaagtcatcccgctttttttg
aaaggagaatgtgatattatagggcaggctcagaccggaaccgggaaaacaacggctttc
ggagcccccattatagaaaaaattccggaaaaatcaggaaaggtgcaggctatagtcctg
accccgactcgagaattagcaatccaggtctcagaagaacttaactctctgaaaggagac
aaaaagctgcatattgtcccgatttatgggggacagtccatgacccagcagttcagaatg
ctgaaaagcggagttgatattgtcgtgggaactccaggaagggtcatcgatcaccttgag
cggaagagcttgaatcttgagaacattgcttatttcgtactggatgaagctgatgaaatg
ctcaatatgggctttattgatgatattaaggaaatcttaaaggcaactgggcctgataag
agaatgcttttcttttcagctacaatgccaaagcctatccttggcatcatcaagaaacac
atgaagaactatgaatatgttgctattaagaaagaagatcttgatgtgaaccttactgag
cagatttatttcgaagtcaaggaaagcgacaaatttgaagccctgtgcaggattatcgat
attgaagacgaattctacgggcttgtgttctgcagaacaaaaaccgatacctcccaactt
gcccagaagcttggagaccggggatatgcagccgatgctctgcacggtgatctttcccag
cgtgaaagggaaaagatactgaacaggttcagaaaacaaaagattaacatcctcgtagca
accgatgttgcagctcgaggtatcgatatcatggacctgacccacgtaattaactattct
cttccgcaagaccccgagtcttacgtacacaggataggaagaaccggtagggcaggaaag
cagggaactgcaattactttcgttacatctacggaatacaggcggctcacatacataaaa
aagacttcaaaatccgcaatgaagaggggccgaattcctgagataaaagatgtaattaaa
gctaaaagggcaagagtaaaagccgaactcgaagaaactataaaaaacgaggagtacgga
gactgtcttgagatgagtgaaaagttccttgaagaatacccggccgagaaaatcctggct
gctctcctgaagtactctttcaaagagatgttcgacgaaagcatgtacacagagatctcc
ggaagttcatatgtcgaccggaaaggcaaaaccaggcttttcatcgcaatgggaaaagct
gacggcatgacccctgagaagctctgcgagtttatacaggaagaaaccggagtaagcgac
cttaaaataagggatgcagaaattttcccgcacttctccttcgtaactgtaccttttgcc
caggcttcagccctgcttgaaatcttcaaagacaaaaagagaggtcgaaaaccctttata
gagcttgcccagaaatcaaagagaagaagctcaaagagtgcggatgaatatcgtggtggc
actcgtaatggctccaggagttattctagaaatgactcctggaatggctctcgcaatacg
aacagcaaaagttatacaagagatacacgaactgcgaagaaaaaatattcttcgtactaa
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