Methanosarcina barkeri Fusaro: Mbar_A1252
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Entry
Mbar_A1252 CDS
T00271
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mba
Methanosarcina barkeri Fusaro
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mba03016
]
Mbar_A1252
Enzymes [BR:
mba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mbar_A1252
Transfer RNA biogenesis [BR:
mba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mbar_A1252
Prokaryotic type
tRNA splicing ligases
Mbar_A1252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAZ70216
UniProt:
Q46D26
LinkDB
All DBs
Position
1:1556509..1558011
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AA seq
500 aa
AA seq
DB search
MVESEDTAIEESSTENVQKEVKGMVRKLSENEWEIPVGHIPNMRVPGRLFVSQSLLEGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDVEEGIISPGGVGFDINCGV
RLIRTNLQKEEVVPNIKRLTDELFSNIPAGVGSKSRIRASDQELDSAFLEGANWAVEAGY
GVEADVKHCEANGYMEGADPAQVSAKARKRGKPQLGTLGSGNHFLEVQYVDKIYDQEIAS
TFGLQEGQVTVMIHCGSRGAGHQICTDHLKELSQAVKNYKIEIPDKQLACAPAQSREAQN
YFKAMLCAANYAWANRQIITHWTRESFENVFGRDADDLGMDLLYDVAHNVAKLEKHLVDG
KKKEVYVHRKGATRAFPPGHPEVPAVYRDVGQPVLIPGSMGTPSYILCGLEEAMNVSFGS
ACHGAGRVMSRAHAKKEFRGQSIKENLEARGITVRATHPSVIAEEAPDVYKSSSEVVNVV
HELGIARKVARVLPLGVTKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaagtgaagatacagctattgaggaatcaagcacggaaaacgtacagaaggag
gtgaagggtatggtcaggaaactttctgaaaacgaatgggaaattcctgttgggcacatt
ccgaacatgcgagttccgggccgcctgtttgtatcccagagtttgcttgaaggcattgaa
cccgggactattgaccagattgcaaatgtggcaaccttacctggcattcagaagtactcc
atggcaatgcctgatgctcatcttggttatggctttgctataggaggagttgccgctttt
gatgtagaagaagggattatcagcccgggtggggtaggctttgatatcaattgcggggtg
aggctcattcgtaccaatcttcagaaagaagaggtcgttccgaacataaaaaggttaacc
gacgagctttttagtaatatacccgcaggcgttggttccaaaagtcggatcagggcttcg
gaccaggaactggacagtgcttttctagaaggggcaaactgggctgtagaagccgggtat
ggcgtagaagctgatgtcaaacactgtgaagctaatgggtatatggaaggagccgaccct
gcccaggtaagcgcgaaagccagaaaaagagggaaacctcagttaggaactcttggaagc
ggcaaccatttccttgaggttcagtacgttgataagatctatgatcaggaaatagcctcg
acctttgggcttcaagaaggccaggttacggtaatgatccactgtgggtcaaggggcgca
ggtcaccagatctgtactgaccacttaaaggaactctctcaggccgtaaaaaactataaa
attgaaattccggacaaacaacttgcctgtgcccctgcccagtcaagggaagcccagaac
tattttaaagccatgctctgtgctgcaaattatgcatgggcaaatcgtcagataattact
cactggacaagggaatcgtttgaaaatgtatttgggagagatgctgacgacctgggcatg
gatctgctttatgacgttgcccacaatgtggcaaaacttgaaaaacatctcgtggacggc
aagaaaaaagaggtgtatgtgcacaggaaaggagcaacaagagccttccctccagggcat
cccgaagttccggccgtatacagagatgtaggtcaaccggttctgattcccggaagcatg
gggactccttcttatattctctgcggtttagaagaggctatgaatgtttctttcggtagt
gcctgtcatggggctggcagggtcatgagcagagcacatgcaaaaaaagaattccgcgga
cagagcataaaagaaaaccttgaagctcggggcattacagtaagagccactcatccttca
gtcattgcagaggaagctccagatgtatacaagtccagcagtgaagtggtaaatgttgtg
catgagctcggtattgcccgtaaagtcgcaagagttcttcctttaggagttacaaaaggt
taa
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