Methanosarcina barkeri Fusaro: Mbar_A1376
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Entry
Mbar_A1376 CDS
T00271
Name
(GenBank) DNA helicase RepD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03022
Basal transcription factors
mba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Mbar_A1376
09124 Replication and repair
03420 Nucleotide excision repair
Mbar_A1376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mba03021
]
Mbar_A1376
03036 Chromosome and associated proteins [BR:
mba03036
]
Mbar_A1376
03400 DNA repair and recombination proteins [BR:
mba03400
]
Mbar_A1376
Enzymes [BR:
mba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Mbar_A1376
Transcription machinery [BR:
mba03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Mbar_A1376
Chromosome and associated proteins [BR:
mba03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Mbar_A1376
DNA repair and recombination proteins [BR:
mba03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Mbar_A1376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
HTH_56
nSTAND3
ATPase
OmpH
TIP49
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AAZ70337
UniProt:
Q46CQ5
LinkDB
All DBs
Position
1:complement(1700653..1702974)
Genome browser
AA seq
773 aa
AA seq
DB search
MTQKNGYMRYFTKQSCYPNQAEAMEKIHSALLNEKTVLFEGACGTGKTLSALAPALSVGK
KLNKVVIIVTNVHQQMVQFINEAREISRDNDIKTIVFKGKASMCPKNLDYEECRLKGENT
YDLLDLEREISSKEKELKDAYEKYKRTKDPALYSLRTELEKELEETKKKSRALRNNSCLE
LYEVLKFEGNEFSNWLFSDVRSPEEILEYAEDRDMCGYELLKKELKNAELLICNFHHVLS
AEIFMMLLKWLERDPEDVILIFDEAHNIEASARSHSSTMLSELTIEKALSEVGETPESDN
SLMLGKETDSGGGIPLDQDYAARLYAKKLFTCLLTALRDTYAAKLKFGERNRLGKHWQDI
KISDPYERFDILKARFLREAMKEGFADEEKVLTRLREIGEFGGRLEEIYAENYKKGLLAV
PKRSQIRYVADFLSSYLVLSDRQNYYPILNVRRDFKSDRIAGRIELFTCIPKNVTQPLFD
SIYAAVLMSATLRPFEMIKSTLGISREVEEISYSTTFPRERRLTLAVSIPPLFAKNRDSP
ETLESIKEALLAATVASPGNVIIYFQSYAEALRYTKLLEPELSIPIFLDETGVSAQEIRK
KFFKIGEQGGKALLITYLWGTLSEGVDFRDSRGRTVIIVGIGYPALNDRIKAVESAYDEV
FGCGEGWEFAVQVPTIRKVRQAMGRIVRSPDDYGVRILLDSRYQGSQVRKLGKFSVFDYF
PPEEKREFIDIAPKDVGSIVKEFFAHVTHSNLENESKSQTSSRVGFGSLAEKL
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaaagaacggatatatgcggtattttacgaaacagagttgctaccctaaccag
gcagaagccatggagaagatccactcggctctcctgaacgaaaaaaccgtactctttgaa
ggagcatgtggaacaggcaagactttaagtgcacttgctcctgcactgagtgtggggaaa
aaactcaataaggtcgttattatagtcactaatgtccatcagcagatggttcaatttata
aatgaggcaagagagatttcccgggataacgacataaaaacaattgttttcaagggcaag
gcttcgatgtgccccaaaaatctcgattacgaagaatgcaggctcaaaggagaaaatacc
tatgacctccttgaccttgagcgggaaatttcttcaaaagaaaaagagctcaaggatgcc
tatgagaaatacaaacgaacaaaagatcctgctctttattccctgagaactgagcttgaa
aaagaactcgaagaaactaagaaaaaatctcgggctttgaggaataattcctgcctggag
ttatatgaagtcctgaaatttgaaggtaacgaattttccaactggcttttttccgacgta
agaagcccggaagaaatcctggagtatgccgaagaccgggatatgtgcgggtatgaactg
ctgaaaaaagaactcaaaaacgccgaacttctaatctgcaattttcatcatgtccttagt
gccgaaattttcatgatgctgcttaaatggcttgaacgagatcctgaagatgttattctg
atttttgacgaagcacataatattgaggcatctgcccgttcccactcttcaacaatgctc
tcggaactgactattgaaaaagctctttcggaagtaggtgagactcctgaatctgacaat
tcccttatgttaggaaaagaaactgactcaggaggtggcattccccttgaccaggactat
gcggctagactatatgcaaaaaagctgtttacctgcctccttaccgctctcagggataca
tatgctgcaaaattgaagttcggggaaagaaacaggcttggaaaacactggcaggacatt
aagatcagcgacccttatgagcgctttgacatcctgaaagctcgctttttgcgagaagcg
atgaaggaaggctttgcagatgaagaaaaagtcctcacaaggctgcgggagattggcgag
tttggaggaaggctggaagagatttatgcggaaaattacaaaaaagggcttcttgcagtt
ccgaaacgttcccagatccggtatgttgcagactttttatcctcttacctcgtactttcg
gacaggcaaaactactatccaattctgaatgtgcgcagagatttcaaaagcgatagaata
gccggcaggattgagcttttcacatgcattcctaaaaacgtgactcagcctctgtttgat
tccatttatgcagcagtactcatgtcagctacactccgacccttcgaaatgataaaatcc
acgcttggcatctcaagggaagtggaagagatttcctatagtacgacctttcccagggaa
aggaggcttacacttgcggtttccattcctccgctttttgcaaagaaccgtgacagcccg
gaaacgcttgagagcattaaagaagccctgcttgcagctactgttgcatcgccaggaaac
gtgattatttacttccagagctatgctgaagcactccgctatactaaactccttgaacct
gaactttctattcctattttccttgatgagacaggggtttcagcccaggaaatccgaaag
aagtttttcaaaatcggagagcagggaggaaaagccttacttataacctatctctgggga
acattgagtgaaggtgttgatttcagagattccaggggcaggaccgtgattatagtggga
atcggatatccggccctaaatgaccgaatcaaggctgtcgaatctgcttatgatgaagtt
ttcggctgtggtgaaggctgggagtttgcagttcaggtgcctacaatcaggaaggtcaga
caggcaatgggaaggatagtgcgttctccagacgactatggagtaagaattctccttgat
tctcgctaccagggctctcaggtacgtaaactcggtaaattttcagtttttgattatttc
ccgcctgaagaaaagagggagttcatcgacattgcacccaaggatgtgggaagtatcgtg
aaagaattttttgcacacgtcacgcatagtaatctcgaaaatgaatcgaagtcccagact
tcaagtcgtgtgggtttcggaagccttgctgaaaagctttga
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