Methanosarcina barkeri Fusaro: Mbar_A1636
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Entry
Mbar_A1636 CDS
T00271
Name
(GenBank) putative RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbar_A1636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mba03019
]
Mbar_A1636
Messenger RNA biogenesis [BR:
mba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mbar_A1636
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Mbar_A1636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
HypA
S1
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AAZ70581
UniProt:
Q46C11
LinkDB
All DBs
Position
1:2017680..2018636
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AA seq
318 aa
AA seq
DB search
MIRIRKSKTTRKKLTGPSEGKSVAENVTQITSESRDQYKGQSRDQFKTQPRGQVKNQPRE
QSREYKSQSRDHFRGRPRDQLKGQSRSQSKDQFRGDQGKKRRFPYQKKGSRERSNMPESK
APQEAKTPEEELEKGGFVLPGELVGTTEEFKPGEGTTVSAGDIYSTATGTVIIDRKARVV
SVRPRTLTPNILKVGDIVYGKITDVRESGAMVEVAGIEGKEDREIVNVRLGDIHVSNVRD
SYVKRLSDEFRHFDIVRARVLDTERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPV
CNMTETRKISTEYGKGIK
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattagaaaaagtaaaacaacgagaaaaaaattgactggcccgagcgaagga
aaatcggttgccgaaaatgtaactcaaattacttccgaaagcagagatcagtacaaaggc
cagtcgagagatcagtttaagacccagcccaggggacaggttaaaaatcaaccaagagag
cagtccagagaatataagagccaatcaagagatcacttcagggggcgtcccagagatcag
ttaaaaggtcagtccaggtctcagtcaaaggaccagttcaggggagaccagggcaagaaa
agaagattcccttaccagaaaaaaggctccagggaaagatcgaatatgcctgaatcaaaa
gctccccaagaggctaagactccggaagaagagcttgaaaaaggaggttttgtgcttcct
ggagagcttgtgggaacgactgaagagttcaagcctggggaaggaacaactgtgtctgcc
ggagatatttactctacagctaccggtaccgtaattattgacaggaaagcaagagtagtc
tcggtcaggccacgcacgctcactccgaatattcttaaagtaggggatattgtctatgga
aagataactgatgtgcgcgaatccggggcaatggtggaagttgcaggaattgaaggcaaa
gaagacagggaaattgtcaatgtgcgtttgggagacatccatgtgtcgaatgtgcgtgac
tcttacgttaagagactttcagatgagttcagacactttgatattgtcagggccagggtt
ctcgacactgaaagaatgcgtcttacaacagctgaagattccctcggagttgtaaaagcc
tactgttcaaactgcaaaggagaactcgtgcttgaagggaaaaagcttaaatgccctgtc
tgcaatatgaccgaaactcgcaaaatctcaaccgagtacgggaaaggaataaaataa
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