Methanosarcina barkeri Fusaro: Mbar_A2505
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Entry
Mbar_A2505 CDS
T00271
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbar_A2505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mba03019
]
Mbar_A2505
Messenger RNA biogenesis [BR:
mba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mbar_A2505
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Mbar_A2505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AAZ71418
UniProt:
Q469M4
LinkDB
All DBs
Position
1:3160978..3161760
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AA seq
260 aa
AA seq
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MDKKIVIPGDLISENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSAND
VVIGIVIVVTPSNWIMDIASPYDGLFHVSEYPRRIESREMHEVLNVGDSIILRVKDVDNS
MKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDVELLSKALRKIEAEAQRSGLTDRIYNFLKNERSKQKESKPAKFFKSGKKEVKLP
KEDHSEEIYRKIDVLLDPNN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgatatccgagaattcgaaaaaagctgga
tacgggacttatgtcaagaacgacaagatctattctttattttgtggcattgaaaatctc
aaagaagataaagttggagtgatccctcttgcgggagtttatatcccttccgcaaatgat
gtggtgatcgggatcgttattgtggttactccatccaactggataatggatattgcttct
ccttatgacggcctgttccatgtatccgagtatcccagaagaatagaatcccgggagatg
catgaagttctgaatgtaggcgactctataatccttagagtaaaagatgtagataattcc
atgaaagtcgagcttgcccttagagattcgagcttccataaattgaaaacaggtcagatc
gttgaagttgagcctgtgaaagtcccacgtgtgataggacacggtggttccatgatctca
atgctgaagaaagaaacaaactgcagcattttcgttggccagaacggcagaatatggatc
gatggaaaggacgatgatgtggagcttttaagtaaggctctccggaagatcgaagccgaa
gcccagcgttccggattgacggacaggatctacaactttttgaaaaatgagcggagcaag
cagaaagagtcaaagcccgccaagttttttaaaagtggtaagaaagaggtaaagttgcca
aaagaagatcattccgaagagatttacaggaagatcgatgtgttactggatccaaataac
tga
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