Methanosarcina barkeri Fusaro: Mbar_A2506
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Entry
Mbar_A2506 CDS
T00271
Name
(GenBank) ribosomal RNA-processing protein RRP41/SKI6
KO
K11600
exosome complex component RRP41
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbar_A2506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mba03019
]
Mbar_A2506
Messenger RNA biogenesis [BR:
mba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mbar_A2506
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Mbar_A2506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AAZ71419
UniProt:
Q469M3
LinkDB
All DBs
Position
1:3161834..3163339
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AA seq
501 aa
AA seq
DB search
MSDKPEKLITDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREA
HPRRSQRADTAVIRYKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTA
IDIFVEILQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGEITLLQMDGNLTTDEIRKGFELVKKGCKEILEIQQAVLRTKFETPVE
EPEAKAAEEVEETELEVVETESSLEYAPEAAVVEEIIEEAEEPEEGISEETVEACAVNKE
APECEELEKVIKDAEAEVVEGEVTEKVVEAEVEEEAEEEAFEDKADFESSFEASFEEVSE
AEELEEPESEEVVSGEEAEVESEIEESADEEAQPEVETQLEVETQLEEKAEVEEETQLEE
KVQPEEEAGIEEVQPEEEAGIEEVASEETFESEPEIESEAESKKEAPAEQTIEESEEEKC
KGPWKVVKDPSESGSRGENDE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacctgaaaaattaatcactgacgatgggctgcgccttgacgggaggcat
gcggatgaaatcaggcccatgaaaatagagatcggcgttctttcacgagccgatggttca
tgttatcttgaatggggaaggaataaggtccttgtaggcgtatttggtcctagggaagct
cacccccgtcgttcacagcgcgcagatactgcagttatccgttataaatataatatggct
tctttttccactgaagaccgagctaggcctggacctagcagacggagtattgaaatttct
aaagtttccagggaagcttttgagccggtaattatggcagagctcttcccgaaaactgca
atcgatatttttgtggaaatacttcaggctgatgcagggacaaggacagcagcaattaat
gcttcaagcatagcgcttgcagatgcaggcattcctatgaaaggcctggttacttcctgt
gcttttggaaaagttgacgggcagatagtgcttgatcttaacaaagaagaggacaattat
ggcgaggctgattttcctgttgcaatgactcaggatggagaaattaccctgctccagatg
gatggaaatctaactactgatgaaattagaaaaggcttcgagcttgttaagaaaggctgc
aaggaaatccttgaaattcagcaggcagtgttgagaacgaagtttgagactcctgttgaa
gaacctgaagccaaagccgctgaagaggttgaagagactgagcttgaggttgtggaaacg
gaatcttctctagaatatgctcccgaagcagcagttgtagaagagattattgaggaagct
gaagagcctgaggaaggtatctctgaagaaaccgttgaagcctgtgctgttaataaagag
gctccagagtgtgaggagctagaaaaagtcattaaagatgccgaggctgaagtagtagaa
ggggaagttacagaaaaagtagttgaagcagaagtcgaagaagaagctgaagaagaggca
tttgaagacaaagctgactttgaatcttctttcgaggcttcttttgaggaagtttccgaa
gctgaggagcttgaagaacctgaatctgaagaagtcgtttccggggaagaagcagaagtc
gagtccgagatcgaggaatctgctgatgaagaagctcagcctgaagtagaaactcagctt
gaagtagaaactcagcttgaagagaaggcagaggttgaagaagaaactcagcttgaagaa
aaagtgcaacctgaagaagaagccggaattgaagaagtacagcctgaagaagaagccgga
attgaagaagttgcttcagaagaaacttttgaatccgagccagagatagagtccgaagct
gagtccaagaaagaggctcctgccgaacaaaccatagaggagtccgaagaagaaaagtgc
aaaggaccctggaaggtagtaaaagacccctctgaatcaggaagcagaggtgaaaacgat
gagtga
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