Methanosarcina barkeri Fusaro: Mbar_A3242
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Entry
Mbar_A3242 CDS
T00271
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mbar_A3242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mba03400
]
Mbar_A3242
Enzymes [BR:
mba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Mbar_A3242
DNA repair and recombination proteins [BR:
mba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Mbar_A3242
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AAZ72123
UniProt:
Q466R9
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All DBs
Position
1:4159683..4160459
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AA seq
258 aa
AA seq
DB search
MSGNYNLISWNVNGLRAVMKKGFLELLLEQKFDIVCIQETKVSPDKLPREAKNIPGYYNY
FVSAEKNGYSGVGLFSKKKPLKLETGMGIEKFDKEGRFLRADFEDFTLMNIYFPNGKASL
ERLEYKMSFYEAFLDYANSLKAEGKRLVICGDVNTAHKELDLARPKQNETISGFLPEERA
WMDKFLAAGYLDTFRMFNPEGGNYSWWSMRTGARKRNVGWRLDYFFVSEKLRDNVKSAPI
YSEIMGSDHCPVGLELEF
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtaactataatctcatttcctggaatgtaaacggtcttcgggctgtaatgaaa
aaaggttttcttgagcttttgctggaacagaaatttgatattgtctgcattcaggaaact
aaagtttctcctgataaactcccgagagaagcaaagaacattccgggctactacaattat
tttgtctccgcagaaaaaaacggctatagcggggttggactcttctccaaaaaaaagccc
ctgaaactcgaaaccggcatgggaatcgaaaaatttgacaaagaaggccgcttcctgcgg
gccgattttgaggattttaccttgatgaatatctatttccctaatggcaaggcctctctg
gaacgcctggaatacaaaatgagtttctacgaggcttttttagactatgcaaactctctc
aaagccgaaggcaaaagacttgtcatttgcggggatgtaaataccgcccacaaagagctc
gaccttgcccgccccaagcaaaacgaaacgatatccggttttctccctgaagagcgtgca
tggatggataaattccttgctgccggttatcttgacacctttcgtatgttcaatcctgaa
ggcggaaactattcctggtggtcaatgagaacaggagcacgtaaaagaaatgtaggatgg
cgcctggactactttttcgtaagtgaaaaactgcgggacaatgtaaaatctgctccgatt
tatagtgaaattatgggttcggaccactgccctgtaggacttgaactcgaattttaa
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