Candidatus Methylopumilus turicensis: BN1209_0004
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Entry
BN1209_0004 CDS
T03844
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
mbac
Candidatus Methylopumilus turicensis
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbac03032
]
BN1209_0004 (hupB)
03036 Chromosome and associated proteins [BR:
mbac03036
]
BN1209_0004 (hupB)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0004 (hupB)
DNA replication proteins [BR:
mbac03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
BN1209_0004 (hupB)
Chromosome and associated proteins [BR:
mbac03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
BN1209_0004 (hupB)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
BN1209_0004 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Arteri_nsp7a
HU-CCDC81_euk_2
DUF2267
HU-CCDC81_euk_1
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
CEN55066
UniProt:
A0A0B7IXA7
LinkDB
All DBs
Position
1:complement(5757..6041)
Genome browser
AA seq
94 aa
AA seq
DB search
MTTPMNKQELIAKIAAEADISKAAAAKAVDAFTGSVTAALKGGDTVTLIGFGTFAVSNRA
ARIGRNPQTGKELKIAARKAPAFRAGKALKDALN
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgactactcctatgaacaaacaagaattgattgctaagattgctgctgaagctgacatc
tctaaagctgctgctgctaaagctgtagacgcttttactggtagcgttactgctgcactt
aaaggtggtgatactgttacattgatcggcttcggtacatttgctgttagcaaccgtgct
gctcgcatcggtcgtaacccacaaactggtaaagaacttaaaatcgctgcacgtaaagca
ccagctttccgcgcaggtaaagctttgaaagatgcattaaactaa
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