Candidatus Methylopumilus turicensis: BN1209_0054
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Entry
BN1209_0054 CDS
T03844
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1209_0054 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbac03019
]
BN1209_0054 (pnp)
03016 Transfer RNA biogenesis [BR:
mbac03016
]
BN1209_0054 (pnp)
Enzymes [BR:
mbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BN1209_0054 (pnp)
Messenger RNA biogenesis [BR:
mbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BN1209_0054 (pnp)
Transfer RNA biogenesis [BR:
mbac03016
]
Prokaryotic type
tRNA degradation factors
BN1209_0054 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
CEN55112
UniProt:
A0A0B7IVM1
LinkDB
All DBs
Position
1:54545..56665
Genome browser
AA seq
706 aa
AA seq
DB search
MFNKVKKSIQYGAHELTLETGEIARQADGAVMVTYGDTAVLVTVVGKTEVKAGQDFFPLT
VDYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSS
DSEIDPDIPAIIGASAAMAISGIPFYGPLGAARVGYIDGEYIINPSATQMKETELDLVVA
ATASAVMMVESEAKELPEDVMLGAVVFGHEQMQAVINMINEMAAEVAKEAWDWTPPAPNT
AVIEKVTAIANADINAAYQIKSKGARSTKLDEIKNRVMAELITEETSTQEANEIKSAFFD
LEAKVVRSQILNGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTG
RDEQTIDALEGAYNDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALIAALPSQE
DFGYTIRIVSEITESNGSSSMASVCGGCLALMDAGVPVKSHVAGIAMGLIKEGNRVAVLT
DILGDEDHLGDMDFKVAGTEEGITALQMDIKITGITAEIMQVALSQAKEGRMHILGIMKS
SMDTSRTELSAFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGATIDIEDDGTIKIGC
VSAEAGEEAKRRIEAITAEVEIGQVYEGPVIKLLDFGAIVSLLPGKDGLLHISQIAHERV
NAVGDFLKEGQIVKVKVVEADEKGRVRLSMKALIDAPVAAETPAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaagtaaaaaagagtattcaatacggtgcgcatgagctcaccttagaaaca
ggtgaaattgcacgccaagcagatggcgctgtgatggtgacttatggcgacacagcagta
ttggtcactgtcgttggtaaaaccgaagttaaagcgggtcaagacttcttcccgttgact
gttgattaccaagaacgtacctacgctgcaggtaaaatcccaggtggctttttcaaacgt
gaaggccgtccttcagaaaaagaaacactgacatcacgtttaatcgatcgcccattgcgt
ccattattcccagaagctttttacaatgaagtacaagttgttgctactgtgatgtcatca
gatagcgaaatcgatccagacattcctgccattatcggtgcatcagcagcgatggcaatt
tcaggtattcctttctacggcccactaggtgctgcacgtgttggttacattgatggtgaa
tacatcatcaacccatcagcaacgcaaatgaaagagactgagttggatttagtggttgca
gcgactgcaagtgctgtgatgatggttgagtcagaagcgaaagagttgccagaagatgtc
atgttgggtgctgttgtatttggccatgagcaaatgcaagcagtgattaacatgattaat
gagatggcagctgaagttgctaaagaagcttgggactggacacctccagcgccaaataca
gcagtgattgaaaaagttacagcaatcgcgaatgcagacattaacgctgcataccaaatc
aaatcaaaaggtgcgcgctctacgaagttagacgaaatcaaaaatcgcgtcatggctgag
ttgattactgaagaaacttctacacaagaagcgaacgaaattaaatcagcattctttgat
ttagaagcaaaagttgtgcgtagccaaatcttgaacggtgagccgcgtattgatggccgt
gatactcgaacagtccgtcctattacgatccgtacaggtgtgttgccacgtacccatggt
tcagcattgtttacgcgtggtgagacacaggcgttggttgtagcgacattgggcacaggc
cgtgatgagcaaacaattgatgcgcttgaaggtgcttataacgaccgtttcatgttgcat
tacaacatgcctccatacgcgactggcgaaacaggccgcgttggtactccaaaacgtcgt
gaaatcggccatggccgtttagctaagcgtgctttgattgctgcgcttccttcacaagag
gactttggttacaccatccgtatcgtttctgaaattacagaatcaaacggttctagctca
atggcttcagtgtgtggcggttgcttggcgttgatggatgctggcgtgccagttaaatca
cacgttgctggtatcgcaatgggcttgattaaagaaggtaaccgtgtagctgtgttaaca
gacatcttaggtgatgaagatcacttgggcgacatggattttaaagtagcgggtacagaa
gaaggtattactgcacttcaaatggacatcaagattacagggattactgctgaaatcatg
caagtggcattgtcacaagctaaagaaggccgtatgcacatcttgggtatcatgaagtca
tcaatggatacttcacgtactgaattgtcagcatttgcaccacgtatcatcacgatgaaa
atcaacccagagaagattcgtgatgtgattggtaaaggcggtgctgttattcgtgctttg
actgaagaaactggcgcgacgattgatattgaagatgacggtacaatcaaaattggttgc
gtaagtgctgaagcaggcgaagaagctaaaagacgcattgaagcgattactgctgaagtt
gaaatcggccaagtttacgaaggtccagtgattaaactattagactttggtgcaattgtt
tcattgctaccaggtaaagatggtttgttgcacatctcacaaattgcacacgaacgtgtg
aatgctgtgggcgacttcttaaaagagggtcaaatcgttaaagttaaagtagttgaggct
gatgagaagggccgtgtgcgtctaagcatgaaggctttgattgatgcaccagttgctgca
gaaacaccagctgccgagtaa
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