Candidatus Methylopumilus turicensis: BN1209_0124
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Entry
BN1209_0124 CDS
T03844
Symbol
rpoN
Name
(GenBank) RNA polymerase, sigma 54 (sigma N) factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac02020
Two-component system
mbac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BN1209_0124 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN1209_0124 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbac03021
]
BN1209_0124 (rpoN)
Transcription machinery [BR:
mbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN1209_0124 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
STX17_N
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
CEN55178
UniProt:
A0A0B7ISF4
LinkDB
All DBs
Position
1:complement(112532..114013)
Genome browser
AA seq
493 aa
AA seq
DB search
MKQSLQFKLSQNLALTPQLQQSIRLLQLSSQELNQELETILQENPLLERTDKNDDGSDNI
NEFSIEGFATADSVVSITPAQTNEQNQNESAFQDSLSDDYFGGTSNHRWEENNHADEDID
YTFQEVVVPSLREHLISQLHLMPLSDRDQLLSMVLIDAINEDGYLEQSLEEIAEILNAEL
EVDMLELETALKHIQHLDPPGVGARNLSECLTLQLKLLPNELREENKNVFDLALQMAEQH
LPSLASRDFAKLKKNLRCDDESLRLAQKMLKHLDPRPGSEFTKLASGHYIQHEIMVKKVK
GQWLASLNDEVVPKLRINKLYADILKRNRDSSSQYLNGQMQEAKWMIKNIEQRFSTILRV
SQAIIDQQSQFFEHGEIAMRPLILREIADALGLHESTVSRVTTRKYMLTPRGVYELKYFF
GSHVSTNTGGACSATAIRALIKQLVAEENPKKPFSDNQLTAVLSKQGIVVARRTIAKYRE
SLNIPAANQRKSL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaagcttacaattcaaactctcacaaaacttagcgctaaccccgcaactgcag
cagtctattagactcctccagctttcatcacaagagctcaatcaagagcttgaaaccatc
ttgcaagaaaacccattgctcgaacgcacggataaaaatgacgatgggtcagacaatata
aacgaattcagcatagaagggtttgcgacagcagattcagtggttagcattactcctgcc
caaacaaacgagcaaaatcagaacgaaagcgcatttcaagactcattaagcgatgattac
tttggtggaaccagcaatcatcgttgggaagaaaacaaccatgctgatgaagatatcgac
tacacatttcaagaagtcgttgtaccttccttgcgcgaacacctcatcagtcaacttcat
ttaatgccgctctcagatcgagatcaactgctttcaatggtgctcattgatgcgattaat
gaagatggatacctagagcaatctctcgaagaaatcgctgaaattctcaacgcagaactt
gaagtggacatgctggaacttgaaactgcactcaaacacatacaacaccttgacccacca
ggcgtgggggctagaaacttatccgaatgcctcacattgcaactcaagctgctgccaaat
gaactgcgagaagagaataaaaacgtgtttgatttagccctgcaaatggcggagcaacat
ttaccatcactcgcgtcacgcgactttgccaaactgaaaaaaaacctccgttgcgatgat
gagagccttcgcttagcccagaaaatgcttaagcatctcgatccgcgcccaggaagtgaa
ttcacaaaactcgcctcaggtcattatattcaacatgaaattatggtgaaaaaagtcaaa
gggcaatggcttgcaagtttgaatgatgaggtcgttcctaaattacgtattaataagctc
tatgccgatattctgaaacgtaatcgagatagctcaagccaatatttaaatggccaaatg
caagaagcaaaatggatgattaaaaatattgagcaacggttctccacgattttaagagtg
tctcaggcaatcattgaccaacaaagtcagttcttcgaacatggcgagattgcaatgcga
cccttgatactccgtgaaattgcagatgcacttggtttacacgaatcaactgtctcacgt
gtaacgacgcgaaagtacatgctcacaccacgtggcgtttacgagttaaaatattttttt
ggaagccatgtctcgacaaatacaggtggcgcatgttcagcaacagccattcgagctctg
attaaacaattggtggcagaagaaaacccaaaaaaacctttttcagataatcaactaact
gcagtattatcaaaacaaggcattgtcgttgcaagacgtacaatcgctaagtaccgcgag
tctcttaacatacctgcggccaaccaacgcaagtccttgtaa
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