Candidatus Methylopumilus turicensis: BN1209_0178
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Entry
BN1209_0178 CDS
T03844
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mbac
Candidatus Methylopumilus turicensis
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbac03032
]
BN1209_0178 (topA)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0178 (topA)
Enzymes [BR:
mbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BN1209_0178 (topA)
DNA replication proteins [BR:
mbac03032
]
Prokaryotic type
DNA Topoisomerases
BN1209_0178 (topA)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN1209_0178 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CEN55232
UniProt:
A0A0B7IVX6
LinkDB
All DBs
Position
1:complement(163130..165724)
Genome browser
AA seq
864 aa
AA seq
DB search
MSKLLIVESPSKAKTLEKYLGKEFKVLASYGHVRDLIPKSGAVDTDNDFAMKYEIIDRNS
KHVDAITRAVKDADAIYLATDPDREGEAISWHIAEILKSKNLVKNKLMKRVVFHEITKTA
VQHAIDEPRDILMPLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIVE
RELEIEAFKSQEYWSIHLESRKHQHAFDAKLIQLDGKKVEQFTVINQDQQADIVGELLLK
SAGKTTVSRVEKKQRSRSPAAPFTTSTLQQEAVRKLGFTTSRAMRIAQQLYEGIDTGGGA
VGLITYMRTDSFSLAAEAIAQIRGYIKDNYSAEYLPKLPIAYKTKSKNAQEAHEAIRPTD
ISRTPTSVEQFLTPEQFKLYEMIWKRSVACQMAPAKFDAVSVDLSVGSDANLFRATGQTL
VFPGFMGVYMEGVDDAEEENETKLPVLETGEILDVQKIFGDQHFTEPPPRYGEASLVKVL
EEYGIGRPSTYASIISTLQDREYVLLDKKRFTPTDVGRVVNKFLTDHFTRYVDYDFTANL
ENKLDSVADGEHEWIPLLKEFWDGLHKQIDDKKDVERPGTELIDEACPKCGKQLSKQLSR
YGSFIGCTGYNDTPKCDYKRNVDGAAAISSEPIVMGLDAASGKDILLLNGPYGPYLQLGL
PEADAKKKPKRVSIPKDIPFANVNLDIALQLIALPRDLGLHPETNKKVIANIGRFGPYVN
HDAKFKSIPKTDSVFDIDLPRAVELLAQANTGPAPIRELGNHPTEDGQIAIYAGRYGPYV
QHGKVRATIAKSEDPESLTLEEALELLAAKVLKDAPAKKKPTAKKVAAKKTVVKKAVVKK
TAVKKVTPKKTVAKKAAVKKTATE
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaactgttgattgttgaatccccttccaaagccaaaacacttgaaaagtatttg
ggcaaggaattcaaagtacttgcctcttatggccatgtgcgcgacctcattccaaaatct
ggcgcggtagatactgacaatgattttgcgatgaaatatgaaattatcgatcgcaactca
aaacatgtcgatgccattacccgtgcagtcaaagatgcagacgctatctacctcgcaacc
gatccggaccgagaaggagaggcgatttcttggcacatcgcagagattttaaaaagcaag
aatctcgttaaaaacaaattaatgaagcgtgtagtttttcacgaaatcactaaaacagcc
gtacagcacgcgatcgatgagccacgcgatattctgatgccgctcgttaatgcacaacaa
gcacgtcgggcacttgattacttagtgggctttaacctttctcctctgttgtggaaaaaa
attcgtcgcggcctatcagctggtcgggtacaaagcccagcactgcgtttaattgttgag
cgtgagcttgaaattgaagcgtttaagagccaagaatattggtctattcacttagaatca
cgcaaacatcagcatgcttttgatgcaaaattgatccaacttgatgggaaaaaagttgag
caattcaccgtcatcaatcaagatcaacaagcagatattgttggtgagttactccttaaa
agcgcaggaaaaaccacggttagtcgcgttgagaaaaagcaacgcagccgaagcccagct
gcgccattcacaacatcaacgctacaacaagaagccgttcgtaaactaggatttacaacg
agtcgtgcaatgcgaattgcacaacagctttatgaaggcatagacactggtggcggtgca
gttggcttaatcacttacatgcgtactgattctttcagcttagctgctgaagcaatcgcg
cagattcgtggctatatcaaagataactattcggctgaatatctacctaagttaccgatt
gcatacaaaactaaatcaaaaaatgcacaagaagcccacgaagcgattcgccctactgat
atttcacgcacaccaacaagcgttgagcagttcttaacaccagagcagttcaagctttat
gaaatgatttggaaacgctctgtagcatgccaaatggcgcctgcaaaatttgacgcagtc
agtgttgacttgtccgttggtagcgatgccaatttgttccgcgccacaggtcaaaccctt
gtattccctggatttatgggcgtctatatggaaggcgttgatgatgcggaagaagaaaac
gaaacgaaattacctgtactagaaactggtgaaattttagacgtacaaaagatttttggt
gaccaacatttcacagagcctcctcctcgctacggtgaagctagcttggttaaggtcctc
gaagagtatggcataggccgcccttcaacttatgcaagcatcatttctaccctgcaagat
agagagtatgttttattagataaaaaacgttttacgcctactgatgttggtcgcgtagtg
aataaattcttaacagatcactttacgcgttatgtggattatgacttcactgccaacctt
gaaaataaactggatagtgttgcagatggcgagcacgaatggattccgcttctaaaagag
ttttgggatggcttacataagcaaatcgacgacaaaaaagatgtcgagcgcccaggcact
gaactcatagatgaagcttgtccaaaatgtggcaagcaactctccaaacaactcagccgc
tacggaagttttatcggttgcacaggctataacgatactccgaaatgtgactacaagcgc
aatgtggatggcgctgctgccattagtagtgagccaatcgtcatgggcttggatgctgcg
tcaggcaaggacattttattactgaatggcccatatggcccataccttcaacttggtcta
ccagaagcggatgcgaagaagaaacctaaacgtgtgagtattcctaaggatattccattt
gcaaatgttaatctggacatcgctttgcaattaatcgcattgcctcgtgacttaggcttg
catccggaaaccaataaaaaggtgattgctaacatcggtcgctttggcccttatgtcaac
catgatgcgaagtttaaatccatccccaaaacggatagcgtatttgatatcgatttaccc
cgtgcagttgaattacttgcacaagcaaacacaggaccagcgccaatacgtgagcttgga
aatcacccaacagaagatggtcaaattgcaatatatgcaggacgctatggtccatacgtt
caacatgggaaggtcagagcgacaattgcaaaaagcgaagatcctgaatcattaacttta
gaagaggcactggaacttttggctgcaaaagtgctaaaagatgcgccagctaagaaaaaa
ccgacggccaagaaagttgcagcgaaaaagacagtcgtcaaaaaagccgttgtgaaaaaa
actgcggttaaaaaagtaacgcctaaaaagacagttgcaaaaaaagcagccgtcaagaaa
acagccactgaataa
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