Candidatus Methylopumilus turicensis: BN1209_0233
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Entry
BN1209_0233 CDS
T03844
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN1209_0233 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbac03021
]
BN1209_0233 (rpoB)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0233 (rpoB)
Enzymes [BR:
mbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN1209_0233 (rpoB)
Transcription machinery [BR:
mbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN1209_0233 (rpoB)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN1209_0233 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CEN55286
UniProt:
A0A0B7IXX5
LinkDB
All DBs
Position
1:205431..209669
Genome browser
AA seq
1412 aa
AA seq
DB search
MVEDKALNYVPYLLPFTPLGDAMSYSFTEKKRIRKSFAKRESVQEIPYLLAMQLESYAAF
LQANVIADKREDAGLQATFSSIFPIVSHSGNARLDYVSYHLGAEPFDVKECQQRGLTYAA
PLRVKVRLTIMDKEASKPTVKEVKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPG
VFFEHDRGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALG
YTPEQILETFYDVDTFHLSAKGVQFELVPERLRGEVAKFDITAKDGTVIVAKDKRITVKH
IRDMEKAGISKIAVPVEFVLGRTIANAIVDKETGEVVANANDEITESLLEKLHGASVAKI
NTLYANDLDHGDYISQTLRIDEIPDQYSARVAIYRMMRPGEPPTEDAVQALFEGLFFNPD
RYDLSVVGRMKFNRRAFPEKIEDRIAAWLRKFYEKVGPQGAEGASTLSNEDILAVVGVLL
ELRNGRGEIDDIDHLGNRRIRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLI
NAKPVSSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHTT
HYGRVCPIETPEGPNIGLINSLALYARTNKYGFLETPYRRVDGNKVSANIDFLSAIEESQ
YMIAQANSELDAKGNFKEDLISARYHNEFTMTQPDRVQYMDVAPGQIVSVAASLIPFLEH
DDANRALMGANMQRQAVPCLRAEKAVVGTGIERTVAIDSGTTVQARRGGIVDYVDSGRIV
IRVHDAEALAGEVGVDIYNLTKYTRSNQNTNINQRPLVNVGDVLARGDVIADGASTDMGE
LALGQNMLVAFMPWNGYNYEDSILISERVVSDDRYTSIHIEELSVVARDTKLGAEEITRD
ISNLSERMLGRLDESGIIYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDV
KDTSLRVPSGMSGTVIDVQVFTREGIDRDTRAQQIIDDQLGHYKQDLADQMRIVEDDAFG
RIQRLIEGKSATGGPNKLKKGETVTAEYLQAIGRYDWFDIRLADEEAARQLEQLKDSLSQ
ARVEFDSRFEEKKRKLTQGDDLQAGVQKMVKVYIAVKRRIQPGDKMAGRHGNKGVISKIA
PVEDMPHMADGTPVDIVLNPLGVPSRMNIGQILETHLGWAAKGLGMRIGEMLATQAKVSE
VRKFLDQIYNDSNGKGEDIKSLSDKEVLDLAKNLEHGVPFATPVFDGATELDIKAMLDLA
FPDDDPRTKQLKFSAGKTQVQLIDGRTGDPFERPVTVGYMHVLKLHHLVDDKMHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVSGRTKVYENIVK
GEHKIDAGMPESFNVLVKEIRSLAIDIDLDRN
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagataaggcattaaattatgtgccttaccttctaccttttacccccttagga
gacgctatgagctattcctttaccgaaaagaaacgcattcgtaagagctttgcaaaacgt
gaaagtgtgcaggaaattccatacttactcgcgatgcaattggaatcgtatgctgcgttt
ttacaagcaaatgttattgctgacaaacgtgaagatgctggtttacaagcaacatttagt
tctattttcccaatcgttagccactcaggtaacgcacgtttagattacgtgagttatcac
ttgggtgctgagccttttgacgtgaaagaatgtcaacaacgtggcttgacttacgcagcg
ccattgcgtgtcaaggtgcgtttgaccatcatggataaagaggcttcaaagccaactgtg
aaggaagtgaaagagcaagaagtttacatgggcgaattgcctttgatgactgaaaatggc
tcatttgtgattaacggtaccgagcgtgtgattgtttctcaattgcaccgtagcccaggc
gtattctttgagcatgatcgtggtaaaacacacagctcaggtaaattattattctcagct
cgaatcatcccttaccgtggctcttggttggatttcgagtttgatccaaaagactacttg
tacttccgtgttgatcgtcgccgtaagatgccggtcactattttgcttaaagcacttggc
tacacaccagaacaaattcttgaaacattctatgacgtggatacattccacttgtcagca
aagggtgttcaatttgaattagtgcctgaacgtctacgtggtgaagttgctaagttcgac
atcactgctaaggacggtacagtaattgttgctaaagacaagcgcattactgttaagcat
atccgtgatatggaaaaagcaggcatcagcaaaattgctgtgccagttgaattcgtttta
ggtcgtaccattgcaaacgctattgtagataaagaaacaggtgaagttgttgcaaacgca
aatgacgaaatcactgaaagcttattagaaaaactacacggcgcaagtgttgccaaaatc
aacacgctttatgctaacgatttagaccacggtgattacatttcacaaacattacgtatt
gatgaaatccctgaccagtacagcgcgcgtgttgcgatttaccgcatgatgcgtcctggt
gagccaccaacggaagatgcagttcaagcattgtttgaaggcctgttcttcaatccagat
cgctacgatttgtcagttgttggtcgtatgaagttcaatcgtcgtgcattcccagagaaa
attgaagatcgtatcgctgcttggttgcgtaaattctatgaaaaagttggcccgcaaggt
gctgaaggtgcttctacactttcaaatgaagacatcttggcagtggttggcgtgttacta
gagttgcgtaacggccgaggcgagattgacgatattgatcatttgggtaaccgtcgtatc
cgttcagtaggtgagttagcagaaaaccaattccgcgcaggtctagtgcgtgttgaacgt
gctgttaaagagcgtttaagccaagcagaatcagataacttgatgccacacgatttgatt
aacgctaagcctgtatctagtgcgattcgtgagttcttcggctcaagccaattaagtcag
tttatggatcaaaccaatccattgtctgaaattacgcacaaacgtcgtgtttcagcgtta
ggccctggtggtctgacacgtgaacgtgctggttttgaagtgcgtgacgttcatacaacg
cactacggtcgtgtatgtccgattgaaacgccagagggtccaaacattggtttgattaac
tcattggccctttatgcacgtacaaataaatacggcttcttagaaacgccttatcgccgt
gttgatggtaataaagtttcagcaaacatcgacttcctctcagcgattgaagagagtcaa
tacatgattgcgcaagctaactcagagttagatgctaaaggtaactttaaagaagacctt
atctcagcccgttatcacaacgaatttacaatgacgcaacctgaccgtgttcaatacatg
gacgttgcgccaggccaaattgtttctgttgcggcttcattgattccattcttggaacac
gatgatgcgaaccgtgcattgatgggtgcgaacatgcaacgtcaagctgtgccatgtcta
cgtgctgaaaaagcagtggtaggtacagggattgaacgtaccgtggcgattgactctggt
acaacagtacaagcgcgtcgtggcggtatcgttgattacgtagattcaggccgtatcgtg
attcgtgtgcatgacgctgaagcgcttgcaggcgaagttggtgtggatatctacaaccta
acgaaatacacgcgttctaaccaaaacactaatattaaccaacgtccactagtgaacgtg
ggtgacgtattagcacgtggcgatgtcattgctgacggtgcatcaacagacatgggcgaa
ttagcgcttggtcaaaacatgctagtcgcatttatgccatggaatggttataactacgaa
gattcaattctaatttcagagcgtgttgtatctgacgatcgttacacttcaattcatatt
gaagaattgtcagtcgtggcacgtgatacgaaattaggcgctgaagaaattacgcgtgat
atctcaaacttgtctgagcgtatgcttggtcgtttggatgaatcaggcattatctacatc
ggtgcagaggttgaggctggcgacgtattggttggtaaagtaacgcctaagggtgaaaca
caactgacaccagaagagaaattactacgtgcgattttcggtgaaaaagcttctgacgtt
aaagatacaagcttgcgcgtgccatcagggatgtcagggactgtgattgacgttcaagtg
ttcactcgtgaaggtattgaccgtgatacccgtgctcaacaaatcattgatgaccaatta
ggtcattacaaacaagatttggctgaccaaatgcgtattgttgaagatgacgcattcggt
cgtattcaacgcttaatcgaaggaaaatcagccactggcggccctaacaagctgaaaaaa
ggcgaaacagtgactgcagaatatctgcaagccattggtcgttatgattggtttgatatt
cgtttggctgatgaagaagcagcacgtcaacttgaacaattgaaagacagcttatctcaa
gcacgtgttgagttcgatagccgttttgaagagaaaaaacgtaaattgacgcaaggcgat
gatttgcaagctggcgttcaaaaaatggtgaaagtctatatcgctgttaaacgtcgtatt
caacctggcgataaaatggcgggtcgtcacggtaacaagggtgttatctctaagattgcc
cctgttgaagacatgccgcacatggccgatggtacccctgttgatatcgtgttgaaccca
ctaggcgttccatcacgtatgaacatcggtcagattctagaaactcacttaggctgggct
gctaagggtcttggtatgcgcattggcgaaatgcttgctacacaagcaaaagtctctgaa
gtgcgtaagttcttagatcaaatctataacgacagcaacggtaagggcgaagacattaag
tcattgtctgataaagaggtgctggacttagcgaaaaatctagaacatggcgtacctttt
gcaacgccagtatttgacggtgcaaccgagttagatattaaagcgatgcttgatttggcg
ttcccagatgatgatccacgtacaaaacaattaaagttctctgctggtaaaacacaggtt
caattaattgatggccgaacaggtgatccatttgagcgtccagtgactgtgggttatatg
cacgtattgaaattgcatcacttggttgatgacaagatgcatgcgcgttctacaggtcct
tacagtttggttacgcaacaaccattgggcggtaaagctcaattcggtggtcagcgcttt
ggtgagatggaagtttgggcattggaggcttatggtgcttcatacaccttacaagaaatg
ctcacagtgaaatctgatgacgtttctggccgtaccaaggtttatgaaaatatcgtgaag
ggcgaacataagattgatgctggcatgccagagtcattcaacgtgttggtgaaagaaatt
cgctcactcgctattgatatcgaccttgatcgcaactaa
DBGET
integrated database retrieval system
