Candidatus Methylopumilus turicensis: BN1209_0294
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Entry
BN1209_0294 CDS
T03844
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03030
DNA replication
mbac03410
Base excision repair
mbac03420
Nucleotide excision repair
mbac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1209_0294 (polA)
03410 Base excision repair
BN1209_0294 (polA)
03420 Nucleotide excision repair
BN1209_0294 (polA)
03440 Homologous recombination
BN1209_0294 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbac03032
]
BN1209_0294 (polA)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0294 (polA)
Enzymes [BR:
mbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1209_0294 (polA)
DNA replication proteins [BR:
mbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1209_0294 (polA)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BN1209_0294 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1209_0294 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CEN55347
UniProt:
A0A0B7IW82
LinkDB
All DBs
Position
1:complement(256425..259202)
Genome browser
AA seq
925 aa
AA seq
DB search
MKTLLLVDGSSYLYRAFHAMPDLRNRQNEPTGAIQGVLNMLRRLHKEYPADYSACIFDAK
GKTFRDDIYPEYKANRASMPDDLRAQVEPLHEAIKAMGWPLIMEEGVEADDVIGALAKQA
EREGIRVIISTGDKDIAQLVNEHVTIVNTMSNEVLDIAGVTNKFGLPPERIIDYLTLIGD
TSDNVPGVEKVGPKTAVKWLTQYGTLDNIVAHADEITGVVGENLRKALPWIPTARELITI
RCDVGIQESLGDLAPRAMDKNKLAELFEHFDFKSWRRELDSMGGEPVSVTPLTVPTSSGD
LFAPTSETVNTPPTETTVDYTPITTRNYATILSEADLDVWLDKINQAKLVCFDTETTSLD
PMTAKIVGMSFSIEAGSGAYLPLTHDYFDAPAQLNLAATLAKVRPILENSAIKKVGQNLK
YDQHVLANHGIALRGIAHDTLLQSYVFESHKTHNMDDLAMRHLGIKTISFDEIAGKGAKQ
VGFNQVTVEVAAAYAAEDADITLQLHQAMYPVIQADDKLDFIYSQVEMPSREVLFTIERN
GVLIDQGMLNRQSNEIGMKLMDLEKQAFELAGQPFNLASPKQLQEILFGKLGIKPTKKTP
SGAPSTDEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPKMINTQTGRVHTSYNQAV
AITGRLASSDPNLQNIPVRTAEGRRIREAFIAPTGSVIVSADYSQIELRIMAHLSQDDGM
LSAFANNEDIHRATAAEIFGCEREAVTSEQRRYAKVINFGLIYGMSAFGLAQNLNIDRSA
AQSYIERYFARYPGVRAYMQDTRELAKQKGYVETYFGRRLWVPEINSSNGMRRAGAERAA
INAPMQGTAADLIKLAMIAVQNWIAAQQLQTKLIMQVHDELVLEVPEAELDLVKTMLPQL
MQNVAKLDVPLLAEVGVGNNWEAAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattgttgttagtggatggttcatcctacctttatcgtgcctttcacgccatg
ccagatttacgcaatcggcaaaacgagccaactggcgcgattcaaggcgtactcaacatg
ctaagacgcttacataaagaatacccagctgattatagcgcgtgtatttttgatgcaaaa
ggcaaaaccttccgcgacgacatttatccagaatataaagccaatcgcgcctcaatgcct
gacgatttacgtgcacaagttgagccactgcacgaggcaatcaaggcaatgggatggccc
ctgattatggaagaaggcgttgaggcggacgatgttatcggcgcgcttgctaaacaagct
gaacgcgaaggtatccgcgtcattatttctacaggtgataaagacattgctcagttggtg
aatgaacacgtcaccatcgtgaataccatgagcaacgaagtccttgatatcgctggcgtg
accaataagtttggtttgcctcctgaacgcattattgattacctcaccttaatcggcgac
acttccgacaatgtgccaggggtggaaaaagttggcccaaaaacagcggtcaaatggctc
acccaatatggcacgttggataatattgttgcgcatgccgatgaaattacaggtgtcgtg
ggtgaaaacttacgtaaagccttgccttggataccaactgcgcgcgaactgattacgatt
cgttgtgatgtcggcatacaagaatctttaggcgatcttgcaccacgagcaatggacaaa
aataaactggcggaattgtttgagcactttgattttaagtcttggcgccgtgaattagat
tcaatgggtggtgagcctgtgagtgtgacaccacttaccgtgccaacaagtagtggcgat
ttattcgcgcccaccagcgaaactgttaatacacccccaacagaaacgactgttgattac
accccaatcactacccgcaattatgcaaccattctgagtgaagctgatttagatgtttgg
ctcgacaaaatcaaccaagctaaactagtttgctttgataccgaaacaacgtcactagac
ccgatgactgcaaaaatcgtcggcatgtcatttagcattgaggctggctcgggggcttat
ttgccactgacgcatgattattttgatgcaccagctcaacttaacttagcagcaacttta
gccaaagtgaggcccattctagaaaattcagccatcaagaaagttgggcagaatctaaaa
tatgaccaacatgtattagctaatcatggcattgccctacgtggcattgcgcatgacacg
ttgctgcagtcatatgtgtttgaatcacataaaacgcacaatatggatgacctggcgatg
cgccatttgggcatcaaaaccatcagctttgatgaaatcgctggcaagggagctaagcag
gttggatttaatcaagtcactgttgaggtggctgcagcttacgcagcagaagatgcagac
attaccctgcaattacaccaagccatgtatccagtcattcaagctgatgacaagttagac
ttcatttacagccaagttgaaatgccatctcgcgaagtgctttttacgattgagcgcaat
ggcgtgctgatcgaccaaggcatgcttaaccgccaaagcaatgaaatcggcatgaagtta
atggacttggaaaaacaagccttcgagcttgcaggccagccttttaatttagcctcccca
aaacaactacaagagattttgttcggcaagcttggcattaagcctaccaaaaaaacacct
tctggcgccccttcaaccgatgaggacgtacttcaagagttagcgcttgattacccgtta
cccaaggtactactggagtatcgtgggttggcaaaactaaagtcgacctatacagacaag
ctgccaaaaatgattaatacgcaaactgggcgcgtacatacaagctacaaccaagcggta
gccattacgggccgtctagcaagctcagatcccaacttacaaaacattcctgtacgaacc
gctgaaggtcgccgtattcgtgaagcatttatcgcgcctactggcagcgtcattgtctct
gccgactattcacagattgagctccgcatcatggcacatctttcacaagatgacggcatg
ctgagcgcatttgctaacaacgaagatattcacagagcaacagccgctgagattttcgga
tgcgagcgtgaagccgtcaccagcgaacaacgtcgttatgccaaagtgattaactttggg
ttgatttatggcatgagtgcatttggtttagcgcaaaacctcaacatcgaccgtagcgcc
gcccaaagctatatcgaacgctattttgcgcgttatccaggcgtccgagcttacatgcaa
gacacgcgcgaactcgccaaacaaaaagggtatgtagagacctactttggcagacgccta
tgggtaccagaaattaatagcagcaacggcatgcgtcgcgctggcgcagaacgagctgcc
attaacgcccctatgcaaggcaccgcagccgacctgattaaacttgccatgattgccgtt
cagaattggatcgccgctcaacaactacaaaccaaactcatcatgcaagttcacgatgag
ctggtacttgaagtgcctgaagcagaattagatttagtcaaaacaatgttgccacagctc
atgcagaacgtggccaaacttgatgtgccattattggctgaggttggcgtgggtaacaat
tgggaagcggcgcattaa
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