Candidatus Methylopumilus turicensis: BN1209_0723
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Entry
BN1209_0723 CDS
T03844
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03030
DNA replication
mbac03430
Mismatch repair
mbac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1209_0723 (dnaE)
03430 Mismatch repair
BN1209_0723 (dnaE)
03440 Homologous recombination
BN1209_0723 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbac03032
]
BN1209_0723 (dnaE)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0723 (dnaE)
Enzymes [BR:
mbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1209_0723 (dnaE)
DNA replication proteins [BR:
mbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN1209_0723 (dnaE)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN1209_0723 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
CEN55766
UniProt:
A0A0B7IZ40
LinkDB
All DBs
Position
1:702036..705536
Genome browser
AA seq
1166 aa
AA seq
DB search
MRHGYFNQVKFNAMSVNLSQPSFVHLRCHSEYSIVDGTVRIDDYVAHATKDQMPALALTD
LSNLFGAIKFYKEARGNGVKPILGCDLWLENSTNRDQPYRVMLLCQTLVGYTKLCALISR
AYLENQYRGKPEIKREWLIEAGSEGLIMLSSGMMGDIGQALLQGNTATAKQLAQAWADLF
PNRFYIELQRAGHAQQEAYISRAVALASQLALPVVATHPVQFIETEDFKAHEARVCIAEG
YVLADTRRPKAFTEDQYFKTQAEMNALFVDIPEALANSVEIAKRCNLTLSLGKNFLPQFP
TPNGEGLDEYLVTQAQEGLLKRLEVLYPDAEKRAAKAPEYEARLAFETSIIIQMGFPGYF
LIVADFINWAKHNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPD
FDIDFCQEGRDRVIDYVKQKYGLEAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAK
LIPLELGITLKDALEKEPQLAERREQEEEVKELLELALRLEGLTRNVGMHAGGVLISPSK
ISDFSPIYCQANGDSLVSQYDKDDVEAVGLVKFDFLGLRTLTILEMALVNANAQRAEQNL
PALSFETLPIDDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPG
PMDLIPDFCRRKHGLQRVEYPHPAVEPILKETYGIMVYQEQVMQIAQVVGGYSLGGADLL
RRAMGKKKKEEMDAQRAVFVDGAKQKGTPERQAADLFDLMEKFASYGFNKSHAAAYALVA
YHTAYLKTHYPAAFLAATLSADMNNTDSVHIFYDDCVGNGVEVLPPDINQSEFKFKPISD
KQVLYGLGALKGSGEAAIEVILAARQQDGPFKDLFDFCARLDLRKVNRRVIESLIRAGAF
DKLEPNRNALLAGVNLAISAAEQSGAASGQNSLFGAVSDSAAHILPKVPAWAEPEKLQQE
KVALGFYLSGHPYQAYQKELTTFVHTDLGNLKPQDQPQLMAGVVMGVRIRMTQRGKMAIV
TLDDAKSRVEVVVGSEMLAQNAHLIKEDQLLVIEGRVSHDDFSGGVRVNVRKIYDIASAR
SAYANMLKISCNGQADAVKLRELLAPYCRANAEQNNRGCAVKVEYHNSQARVEMMLGEQW
RVELHDDLLIGLKAWLSEENVKILYN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcgacatgggtacttcaatcaggtaaaattcaatgctatgtcagtcaatttatctcaa
ccttcatttgttcatttgcgttgccacagtgagtattccattgtggacggaacggtgcgt
attgatgattacgtagcgcatgccacaaaagaccaaatgccagccttggcattgacagat
ttaagcaatttatttggcgcgattaagttttacaaagaagcccgcggcaatggcgttaag
ccgattttaggctgtgatctttggcttgaaaattcaacgaatcgcgaccagccttacagg
gtgatgttgctttgccaaacattagtgggttacaccaaactttgcgcgctgatcagtcgc
gcttatcttgaaaatcaatatcgtggtaaaccggaaattaaacgcgagtggctgattgag
gctggttcagagggtttaatcatgctctctagcggcatgatgggtgatataggccaagcg
cttttacagggtaataccgcaaccgctaaacagctcgcacaagcttgggcagatttattc
cctaaccgtttttatatcgaacttcaacgcgcaggccatgcgcaacaagaggcttatatt
tctcgtgctgtggcgctggcttctcagctggccttgcctgtggtggcaacacatcctgtg
cagtttatcgagacggaagattttaaagcacatgaagcgcgggtgtgtattgcggaaggc
tatgtgctggctgatacgcgtcgtcctaaagcattcaccgaagatcaatatttcaaaacc
caagcagagatgaatgcgctttttgtggacattccagaggctttggcgaacagcgtggaa
attgccaagcgttgtaatttaacgctttctttgggtaaaaacttcttgccacaatttcct
acacctaatggcgagggtttggatgagtatttggttacacaagcgcaagaaggtttgctt
aagcgcttagaagtgctttatccagatgctgaaaagcgtgccgccaaagccccagaatat
gaagcgcgacttgcctttgaaaccagcatcattattcaaatgggcttccctggctacttt
ttaattgtggcggattttattaactgggctaagcataacggcgtgcctgttggccctggc
cggggctctggtgcgggttcagttgtggcttatagcttgggcattaccgatcttgatcca
ttgcaatacgccttgctgtttgagcgcttcttaaacccagagcgggtttctatgcccgac
ttcgatatcgacttctgccaagaaggtcgtgaccgcgtcattgattacgtgaagcaaaag
tacggattggaggcggtttctcaaatcgccactttcggtaccatggcggctaaggccgtg
attcgcgacgtcgggcgtgtgcttgatttgccttttaattttgtggatggcattgcaaag
cttattccgttagagcttggtattacgcttaaagatgcgcttgagaaagagccgcaatta
gcggaacgtcgtgagcaagaggaagaagtcaaagagctacttgagttagcgcttcgcctt
gagggtttaacgcgtaacgtcggtatgcatgccggtggtgtgctaatttcaccaagtaaa
atttctgacttctctccgatttactgtcaagccaatggcgatagcttggtgagccaatac
gataaagatgacgtagaagcggttggtttagtgaagtttgactttttgggcttacgcaca
ctgacgattttagaaatggccttggtcaatgcgaacgcgcagcgcgcggagcaaaatctg
ccagcgctatcatttgagaccttgccgattgacgacaagccaacttatcagcttctaaaa
tcagccaataccacagcggtattccagctagagtcacgcggcatgaaggacatgcttaaa
caagcaaagcctgactgctttgaagatattattgccttggtggctttgtatcgtcctggt
ccgatggacttgattccagacttctgccgtcgtaagcatggcttacagcgcgtggaatat
ccgcacccagcagttgagcctatcctcaaggaaacctacgggattatggtgtatcaagag
caggtgatgcagattgcgcaggtcgtcggaggctatagccttggcggcgctgacttgctt
cgtcgtgccatgggtaaaaagaaaaaagaagaaatggatgcccagcgtgccgtttttgtg
gacggcgctaaacaaaagggcacgcctgaaaggcaagccgctgatttattcgatttaatg
gagaagtttgcgagctacggctttaataaatcgcatgcggcggcttatgccttggtggct
taccatacggcctatcttaaaacgcattatcctgcggctttcttagccgctactttgtct
gcagatatgaacaacacagacagcgtgcatattttttatgatgactgtgtgggtaacggg
gtagaggtgctgccaccggatattaatcaaagtgaattcaagtttaagcccatcagtgat
aagcaagtgttatatggcttaggtgccctgaagggctcaggtgaggcggcgattgaagtg
attcttgcggcgcgtcagcaagatgggccatttaaggatttattcgatttttgcgcgcgc
ttggatttgcgcaaagtgaatcgccgcgtgattgaatcgctcattcgtgccggcgcgttt
gacaaactagagcctaatcgtaatgctttgttagcaggggtcaatttagccattagtgca
gccgagcaaagtggtgcggcaagtggtcaaaatagcttgtttggtgcggtgtctgatagc
gctgcccatattttgcctaaggtgccagcttgggctgagcctgaaaagttacaacaagaa
aaagtggcgctaggtttctacttgagcggccatccataccaagcctatcaaaaagaatta
acaacatttgtgcacacagatttaggtaatcttaagccacaagatcaaccgcaactcatg
gctggtgtggtaatgggcgtccgtattcgcatgacccagcgtggcaagatggcgattgtg
actttagatgatgctaaatcccgtgttgaagtggtggtggggagtgagatgcttgcgcag
aacgcacatctgattaaagaagaccagctgttggtgattgaaggtcgcgtaagtcatgat
gacttctcgggtggtgtgcgtgtgaatgtacgtaagatttacgacattgcttcagcacgc
agtgcgtatgccaacatgctgaaaatatcctgcaatggtcaggccgacgcagtgaaatta
cgcgagcttttagcgccttattgccgcgctaatgctgaacaaaataatcgtggttgtgcg
gtaaaagtggagtatcacaacagccaagcgagagtagaaatgatgcttggcgagcaatgg
cgtgtagagctgcatgatgatttattaatcggattaaaagcttggttaagcgaagaaaac
gtaaaaatcctctataattaa
DBGET
integrated database retrieval system
