KEGG   Candidatus Methylopumilus turicensis: BN1209_0833
Entry
BN1209_0833       CDS       T03844                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
mbac  Candidatus Methylopumilus turicensis
Pathway
mbac02024  Quorum sensing
mbac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN1209_0833 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BN1209_0833 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbac03019]
    BN1209_0833 (hfq)
   03036 Chromosome and associated proteins [BR:mbac03036]
    BN1209_0833 (hfq)
Messenger RNA biogenesis [BR:mbac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BN1209_0833 (hfq)
Chromosome and associated proteins [BR:mbac03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BN1209_0833 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: CEN55876
UniProt: A0A0B7IZC9
LinkDB
Position
1:816880..817116
AA seq 78 aa
MTPKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGQVDSFDQYVILLKNTVTQMVYKHAI
STIVPGRAVSIPTGVVEE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgactcctaaagggcagttgttacaagacccatttttaaatgcattacgtaaggaacat
gtccctgtgtcgatctatctcgttaacgggattaagttacaaggtcaggttgattcattt
gatcaatacgtgattttgctcaaaaacacagtcactcaaatggtatacaaacatgccatt
tctactattgttccaggccgcgctgtcagcattccaactggagtcgtcgaagagtag

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