Candidatus Methylopumilus turicensis: BN1209_0833
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Entry
BN1209_0833 CDS
T03844
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac02024
Quorum sensing
mbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1209_0833 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BN1209_0833 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbac03019
]
BN1209_0833 (hfq)
03036 Chromosome and associated proteins [BR:
mbac03036
]
BN1209_0833 (hfq)
Messenger RNA biogenesis [BR:
mbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BN1209_0833 (hfq)
Chromosome and associated proteins [BR:
mbac03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BN1209_0833 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
CEN55876
UniProt:
A0A0B7IZC9
LinkDB
All DBs
Position
1:816880..817116
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AA seq
78 aa
AA seq
DB search
MTPKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGQVDSFDQYVILLKNTVTQMVYKHAI
STIVPGRAVSIPTGVVEE
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgactcctaaagggcagttgttacaagacccatttttaaatgcattacgtaaggaacat
gtccctgtgtcgatctatctcgttaacgggattaagttacaaggtcaggttgattcattt
gatcaatacgtgattttgctcaaaaacacagtcactcaaatggtatacaaacatgccatt
tctactattgttccaggccgcgctgtcagcattccaactggagtcgtcgaagagtag
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