Candidatus Methylopumilus turicensis: BN1209_0921
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Entry
BN1209_0921 CDS
T03844
Name
(GenBank) Ribonuclease E (fragment)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1209_0921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbac03019
]
BN1209_0921
03009 Ribosome biogenesis [BR:
mbac03009
]
BN1209_0921
Enzymes [BR:
mbac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN1209_0921
Messenger RNA biogenesis [BR:
mbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN1209_0921
Ribosome biogenesis [BR:
mbac03009
]
Prokaryotic type
rRNA processing factors
BN1209_0921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G_Thio
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
CEN55964
UniProt:
A0A0B7IUM1
LinkDB
All DBs
Position
1:907321..908841
Genome browser
AA seq
506 aa
AA seq
DB search
MVVIDFIDMESQRNQRDVENRLREALHYDRARVQTGKISRFGLLELSRQRLRPSLGESNH
IPCPRCHGTGHIRGIESTALHILRITQEEAMKENSKAIQVQLPVEAATFLLNEKRADIHK
IEQRTGVEVVLIPNIHLETPNYTITRIKSDDSAEDGPRSYQMVEMPTEEEVHNHAATEVK
AVKQVAAVRGITPSAPAPISVEKVEKAVSLLTRFTNWLGSLTKSEAPKPETRENNGRRDN
NRNRNRNRNRNERGDRPERNNQATQAERPQQNQGERPQRNQEPRQPRPQQQPRPQPVAQN
GQVEGAQSTQGEQNVEQREPREGRNRRSRNGRRDRGPRQERPAGDRPFVENEQIVDVTNA
AVAPVTETTQPAESIKVASPNVEAVKIEKVATEAIEVVTTKPVQTEKPAKAVKASKDESI
AEASEDKSAKAPAEKKARPARKPAAKAKPVDLAASGLQLVETKAETKAAVVVEAEAPKKP
RKTAAWQKKADEAAKDEPLVIVQTQK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttggttgtcatcgactttatcgacatggaaagccaacgcaaccaacgtgacgtggaaaac
cgcttacgtgaagcattgcactacgatcgtgcgcgtgttcaaactggcaagatttcacga
tttggcctattagagctatcacgtcaacgcttacgtccaagcttgggtgaaagcaaccac
attccttgcccacgctgccatggcactggtcatatccgcggcatcgaatcaacagcgctt
catatcttgcgtattacccaagaagaagccatgaaagaaaacagcaaagcgattcaagtg
caattacctgttgaagcagcaacgttcttgctgaatgaaaaacgtgctgacattcacaaa
atcgaacaacgtacaggtgttgaagtggtgttgatccctaacattcatcttgaaacccct
aactacactatcacgcgcattaagagcgatgacagtgcagaagacggtccacgcagttac
caaatggtcgaaatgcctactgaagaagaagtgcataaccacgcggcaaccgaagtaaaa
gctgttaaacaagtcgcagctgttcgtggtatcacgccatcagccccagcgcctattagt
gttgaaaaggttgagaaagccgtttcgttattgactcgcttcaccaactggttaggctca
ctcaccaaatcagaagccccaaaacctgaaacacgtgagaacaatggtcgtcgcgataac
aatcgcaaccgtaatcgcaaccgtaatcgcaatgaacgtggtgaccgtccagagcgtaac
aatcaagccacacaggctgagcgtccgcagcaaaaccaaggtgaacgtccacaacgtaac
caagaaccacgtcaaccaagaccacaacagcaaccaagacctcagccagtggcacaaaat
ggccaagtcgaaggtgcacaatccacacaaggtgagcaaaatgttgagcagcgtgagcca
cgcgaaggccgcaatcgtcgaagccgcaatggtcgtcgtgaccgtggtcctcgtcaagag
agaccagctggcgatcgtccatttgttgaaaatgaacaaatcgtcgatgtgactaatgct
gcagtagctcctgtaacagaaacgactcaaccggctgaatcaatcaaagtggcatcgcca
aacgttgaagcggtcaagattgaaaaagttgcgactgaagcaattgaagtggtaacaaca
aaacctgtgcagactgaaaaaccagcgaaagcagtaaaagcttctaaggatgaatcaatt
gctgaagccagcgaagataaatcagcaaaagcacccgctgagaaaaaggcgcgccctgct
cgcaaacctgctgcaaaagccaaaccagtggatttagctgcaagtggcttgcaattagtt
gaaacaaaagctgaaacgaaagcggcagttgttgtggaagccgaagccccaaaaaaacca
cgtaaaactgctgcatggcaaaagaaagctgacgaagctgcgaaagatgagcctttagtc
atcgtgcaaacgcagaaataa
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