Candidatus Methylopumilus turicensis: BN1209_0922
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Entry
BN1209_0922 CDS
T03844
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1209_0922 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbac03019
]
BN1209_0922 (recQ)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0922 (recQ)
Enzymes [BR:
mbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN1209_0922 (recQ)
Messenger RNA biogenesis [BR:
mbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN1209_0922 (recQ)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN1209_0922 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
CEN55965
UniProt:
A0A0B7IUH7
LinkDB
All DBs
Position
1:908920..910740
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AA seq
606 aa
AA seq
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MSTRALEILQNTFGYQAFRDQQATIVNHVSTGGDALVLMPTGGGKSLCYQIPSILRDGLA
IIVSPLIALMQNQVEALQQLGINAAYLNSSLSIEDTQTITRQALRGELKILYVAPERLMA
SSFLQLLDQVNNNVGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFPDIPRIALTATA
DAATRAEIIHQLKLENAAQFVSSFDRPNIRYHVTQKNNARQQLLHFIETQHPNDAGIIYC
LSRKKVEETAEWLASKGWPALPYHAGLDAKIREKNQRQFLREEAVIMVATIAFGMGIDKP
NVRFVAHLDLPKSMESYYQETGRAGRDGFAANAWMTYGLGDVVSMRQMLDSGDASDERKR
LEKHKLDALLGFCESTSCRHQAILHYFGEEHPGDCEQCDNCLTPADTWDATQAARMALSC
VYRTGQRFGAGHLIDVLLGKRTAQIERFQHEQLSTYGIGKNLNQSQWSSVYRQLAASGYL
DVDFQAYGGLKLTEMAKPVLKGELEVWQRRDAEPEKRSSTAERASRAREAYPGANDDPLW
LALKAKRMELAKSQGVPPYLIFHDSTLLEIMNQRPSSLTELGRISGVGQAKLARYGDDFL
EVLEQN
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacgcgctttagaaattctacaaaatacctttggttatcaagcatttcgtgac
caacaagccacgattgtgaatcatgtttcgacaggtggagacgccctcgttctcatgcca
acaggcggtgggaagtccctttgttaccaaattccaagtattttaagggatggcctagca
attatcgtttcaccgctgattgcgttgatgcaaaaccaagtagaggcgctgcagcagctt
ggcattaacgcagcttatttaaattctagtttgagcattgaagatacccaaaccatcacc
agacaagcgctccgaggagagctgaaaattctttatgttgcacccgaaagattgatggca
agtagctttctacagctactcgatcaagtaaataacaatgtaggactggccttatttgcc
attgacgaggcgcattgtgtgtctcaatggggtcatgactttcgaccagaatatcgccaa
ctcaccattttgcatgaacgctttcctgatataccgagaatcgctctgaccgctacagca
gatgccgcaacaagggctgaaattattcatcagcttaagctagagaatgccgcacaattc
gtctcaagctttgatcgccctaacattcgctaccacgtcactcaaaaaaataacgctcgc
caacaattgctccattttattgaaacgcagcatccaaacgatgctgggatcatttattgc
ctatcccgtaaaaaggtggaagaaacggcggagtggttagcttctaaaggctggcctgcg
cttccttaccatgcaggcttagacgctaaaatacgcgagaaaaaccaacgtcaattctta
cgtgaagaggctgtgattatggttgccaccattgcctttggcatgggtatcgacaaaccc
aatgtgcgctttgtcgcccatttagatttacccaaaagcatggaaagttattatcaagaa
accggtcgcgctggtcgtgatggcttcgccgcgaacgcttggatgacctacggcctgggc
gatgttgtttctatgcgtcaaatgcttgatagtggagacgcttctgatgaacgcaaacgt
ttagaaaaacataagctggacgccctcctcggcttttgtgaatcaaccagttgccgacat
caagccattcttcattactttggcgaagagcatccaggagattgtgaacaatgcgataac
tgcctcacgcctgccgacacatgggatgcaacgcaagcagcaagaatggcgctttcatgt
gtgtaccgaacggggcaacgctttggtgcaggccatttaattgatgtattgctgggtaaa
agaaccgctcaaattgagcgatttcaacacgaacaactgagcacctatggtatcggtaaa
aatcttaaccaatcacaatggagtagcgtttatagacaattagcagcaagtggctacttg
gatgttgatttccaagcctacggcggtttaaaactcactgaaatggctaaacctgtatta
aaaggcgaattagaagtatggcaacgccgagatgcggagccagagaagcgctcaagcact
gccgaacgtgcctcacgtgctcgagaagcctacccaggtgcaaatgacgacccgctgtgg
ttagcactaaaggctaaacgaatggagttggcaaaatctcaaggcgtgccgccttatttg
attttccacgacagcaccttgctggagattatgaaccaacgacctagcagtttgaccgaa
cttggacgcatcagtggtgttgggcaagcaaagttagcgcgttatggcgatgacttcttg
gaagtgctagaacaaaactaa
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