Candidatus Methylopumilus turicensis: BN1209_1736
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Entry
BN1209_1736 CDS
T03844
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN1209_1736 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_1736 (uvrA)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1209_1736 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN1209_1736 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_21
AAA_16
RsgA_GTPase
AAA_23
nSTAND1
DnaJ_CXXCXGXG
BCA_ABC_TP_C
nSTAND3
Viral_helicase1
APS_kinase
cobW
Motif
Other DBs
NCBI-ProteinID:
CEN56773
UniProt:
A0A0B7J1Z4
LinkDB
All DBs
Position
1:1703527..1706343
Genome browser
AA seq
938 aa
AA seq
DB search
MDFIRIRGARTHNLKNVSLDLPRNKMIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLARMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARAGDPEC
PEHHIKLEAQTVSQMVDSVLSLPEETKLMILAPVVRERKGEQLDLFDELKAQGFVRVRVD
GEIYELDAPPTLTKTTKHSIDVVIDRLKVRTDMKQRIAESFETALRLAEGKAIAMEMDTG
KEHLFSAKFSCPSCDYSLAELEPRLFSFNNPMGACPKCDGLGQMSFFDPKRVVAFPHLSL
AAGAIKGWDKRNQFYFQLLSSLAAHYKFDLETAFEELPEEVQHILLQGSGKEEIAFKYMN
ERGSFFEKRHSFEGILNNLQRRYHETDSTTVREELAKYLNSQTCPSCAGTRLRTEARHVK
VGNKNIHEVCEVPLKQALTFFETIELHGQKLAIADKIVKEISNRLKFLTNVGLEYLSLSR
SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLMRLRDIGNSVI
VVEHDQDAIMAADYVVDIGPGAGEHGGQIIAEGTPAEIQANPNSVTGQYLSGKKQITYNH
QRHTPDPARWLSLSHATGNNLKDVSLKLPVGLLTCVTGVSGSGKSTLINDTLYRVVAQHL
YGSSAEPAPFDGIEGLEFFDKVVDVDQSPIGRTPRSNPATYTGLFTPIRDLFAGVPESRV
RGYGPGRYSFNVKGGRCEACQGDGVLRVEMHFLPDVYVPCDVCKGQRYNRETLEINYKGK
NIREVLEMTVEQAHEFFNAVPVVQRKLKTLLDVGLGYITLGQSATTLSGGEAQRVKLALE
LSKRDTGRTLYILDEPTTGLHFADIQLLLDVIHRLRDAGNTMVIIEHNLDVIKTADWLID
MGPEGGDGGGTVLVEGPPEKVAQCAESYTGKYLKTMLK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatacgtattcgcggtgctcgcacgcacaatctaaaaaacgtttcgctggat
ttaccgcgtaacaaaatgattgtcattaccggactttctggctcaggcaaatcatcactc
gcttttgataccctttacgctgaaggccaacgccgctatgttgaatctctctctgcttat
gctcgccaattcttggcgcggatggataagcccgatgtcgatttaatcgaagggttatca
ccagccatttctatcgaacaaaaatcgacatcgcataacccacgatcaacagtggggacc
gtgactgaaattcatgattatttgcgtttgctttacgcgcgcgctggcgaccctgagtgt
cctgaacatcatattaaacttgaggcacaaactgtctcgcaaatggtggatagtgtttta
agcctacctgaagaaaccaagttaatgattttggcgccagtagtgcgtgaacgcaaaggc
gaacaactcgacttatttgatgaattaaaagcacaaggttttgtgcgggtgcgtgtagat
ggtgaaatttatgagcttgatgcaccaccaaccctgactaaaacaactaaacactcgatt
gatgtcgtgattgaccgactaaaagtgcgtaccgacatgaaacagcgcattgctgagtcg
tttgaaaccgcgctgcgtttggccgaaggcaaagcgatcgcgatggaaatggatactggg
aaagaacatttattctcagccaagttctcttgtccttcttgtgattattccttggccgaa
ctcgagccgcgtttattctcattcaacaatccaatgggtgcatgtccaaaatgtgatggc
ctaggtcaaatgagcttttttgatcccaaacgcgtcgtggcatttccacatttgtcactt
gccgctggcgctattaaaggctgggataagcgtaaccaattttactttcagctgcttagt
agccttgcagcgcattacaaattcgatttagaaacggcttttgaagagctgcccgaagaa
gttcaacacatattgttgcagggcagcggtaaggaggagatagcctttaaatacatgaat
gagcgcggttcattttttgaaaagcgtcacagctttgaaggcattttaaataatctacaa
cgccgttaccacgaaactgactcaacgactgtgcgagaagagttagcgaaatatctcaac
tcacaaacttgccctagctgcgctggcacgcgtttacgcaccgaagcgcgtcatgtaaaa
gtaggcaataaaaatatccatgaagtatgcgaagtgccactaaagcaagcactaacattc
tttgaaaccattgagctgcatggacaaaagctcgccattgccgataaaattgtgaaagag
attagcaaccgtttgaagtttttaaccaacgttggcttggagtatttatcactttctcgc
tccgctgaaacgctatcaggaggggaggcgcaacgtattcgtttggcctcacaaattggt
tctggcttaacgggcgtgatgtatgtgctggatgaaccttctattggtttacatcaacgt
gataacgatagactattagaaaccttgatgcgtttgcgcgacatcggcaatagtgtgatt
gttgttgaacatgatcaagatgcgattatggcggccgactatgtggtcgatattggccca
ggtgctggtgaacatggtggccaaattattgctgaaggaacgcctgcagaaattcaagcg
aatccaaactcagtgacaggccaatacctcagcggcaaaaaacagattacgtacaaccat
caacgccatacgcctgacccagcgcgttggctatcactctctcacgcaactggtaacaac
ctaaaagacgtatcacttaagttgccagtgggcttgctcacatgtgtcacgggtgtttca
ggttcaggtaaatcaaccctcattaacgacacgctttaccgcgtggttgcgcaacattta
tacggcagctcagcagaaccagcacctttcgatggcatcgaaggcttggagtttttcgac
aaagtcgtggacgtagatcaaagtccaattggaagaacaccgcgctcaaaccctgccacc
tacacggggctatttacaccgattcgagatttgtttgcgggcgttcctgaaagtcgcgtt
cgcggttatgggccaggtcgctactcatttaatgtcaaaggtggacgttgtgaggcttgc
caaggcgatggcgtattaagggtagaaatgcatttcttgccagatgtgtatgtcccctgt
gatgtctgtaaaggtcaacgctacaaccgtgaaaccttggaaattaactacaagggtaaa
aacattcgtgaagtattggaaatgacggttgagcaagcacatgagttttttaatgcggtt
cctgtggtgcaacgcaagctcaaaactttgctcgatgttggtttaggttatattaccctt
ggccaatccgcgacaaccctatccggcggtgaagcgcaacgggtaaaactcgcgcttgag
ctttcaaaacgggatactggccgcacactctacattttggatgaaccaaccactggcctt
cactttgcggatattcaactcctgttagatgtcattcatcgtcttcgtgatgcaggcaat
accatggtaattattgagcacaatttggatgtgattaaaacggcggactggctcattgac
atgggtccagagggaggtgatggtggcggcactgtgctcgttgaaggcccgcctgaaaag
gtcgcgcagtgtgccgaaagctataccggtaaataccttaaaacgatgctgaaataa
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