Aquirhabdus parva: HYN46_03830
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Entry
HYN46_03830 CDS
T05575
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mbah
Aquirhabdus parva
Brite
KEGG Orthology (KO) [BR:
mbah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbah03016
]
HYN46_03830
Enzymes [BR:
mbah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYN46_03830
Transfer RNA biogenesis [BR:
mbah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYN46_03830
Prokaryotic type
tRNA splicing ligases
HYN46_03830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXI02064
UniProt:
A0A345P455
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All DBs
Position
870088..871293
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AA seq
401 aa
AA seq
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MAIQLTLNANSGYGVPVNIFTRDIDDAAIEQLKKVAQLQFIYPHVAVMPDVHQGIGATVG
CVIPTKNAIIPAAVGVDIGCGMNAIRLGLKAAQLPDDLRKIRSDIERTVPVGFNHHSQIK
ARASSIDPLARRLGVITDKHPGLLRMLRNFDRTWQKQLGTLGGGNHFIELCIDEQDDVWV
MLHSGSRGLGNCIGTYFIERAKKEAQSRFGHVPDKDLSYFAEGSANFDDYVEAVHWAQDY
AMENRREMMRLILAKLRVHLPPFQLTKEAINCHHNYVQQERHFGENVYVTRKGAISAQAG
ELGIIPGSMGAKSYIVRGKGNEMSFCSCSHGAGRRMSRNKAKDSFTLDDLAQQTAGIECR
KDKGVMDEIPAAYKDIDQVMANQTDLVEVIHTLRQVMCIKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggctatacaactgactttaaacgccaattctggttacggcgtccctgtaaatattttt
acccgagatattgatgacgctgcaatcgagcaactcaaaaaagtggctcagttgcagttt
atttatccccatgtcgccgtgatgcctgatgtgcatcaaggcattggtgccacggtgggc
tgtgtgatccccaccaaaaacgccattattcctgcggctgtcggtgtggatattggctgc
ggcatgaatgcgattaggctaggtctgaaagcagcgcagttaccagatgacttgcgcaag
attcgcagtgacatcgagcggactgtgcctgtgggctttaatcatcacagtcaaattaaa
gcccgtgcgtcaagcattgatcccttagctcgacgcttaggcgtgatcacagataaacac
ccgggcttattgcgcatgctccgcaattttgaccgcacgtggcaaaagcaattgggtacg
ttaggcggcggtaatcactttattgagctctgtattgatgagcaagatgacgtatgggta
atgctgcactctggcagtcgaggattgggcaactgtattggcacgtactttattgaacgt
gccaagaaagaagcccagagccgatttggtcatgtacccgataaggatttgtcctatttc
gccgaagggtctgcaaactttgatgattacgttgaggcggtgcattgggcacaggattat
gcgatggaaaaccgtcgggaaatgatgcgtctgatactggctaagctgcgagtacattta
ccgccattccaattgaccaaagaggcgattaactgccatcacaactatgtgcagcaagaa
cgtcactttggggaaaatgtctatgtcacgcgcaaaggggcgatcagtgcgcaagcgggt
gagttgggaatcatccccggttcaatgggtgcgaagtcctatattgtgcgcggcaaaggc
aacgagatgtcgttttgctcctgttctcatggagcaggtcggcgtatgagccggaataag
gccaaagattcatttactttggacgatctggctcagcaaacagcaggcattgaatgccgc
aaagacaaaggcgttatggatgagattccagccgcttataaagacattgatcaagtcatg
gcaaaccagaccgatttggttgaggtgatccataccttgcgtcaagtcatgtgtatcaaa
ggttaa
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