Methanosarcina barkeri 3: MSBR3_0017
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Entry
MSBR3_0017 CDS
T04533
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03030
DNA replication
mbak03420
Nucleotide excision repair
mbak03430
Mismatch repair
mbak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSBR3_0017
03420 Nucleotide excision repair
MSBR3_0017
03430 Mismatch repair
MSBR3_0017
03440 Homologous recombination
MSBR3_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mbak03000
]
MSBR3_0017
03032 DNA replication proteins [BR:
mbak03032
]
MSBR3_0017
03400 DNA repair and recombination proteins [BR:
mbak03400
]
MSBR3_0017
Transcription factors [BR:
mbak03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSBR3_0017
DNA replication proteins [BR:
mbak03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSBR3_0017
DNA repair and recombination proteins [BR:
mbak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSBR3_0017
MMR (mismatch excision repair)
MSBR3_0017
DSBR (double strand breaks repair)
HR (homologous recombination)
MSBR3_0017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Ssb-like_OB
POT1PC
RecG_wedge
BRCA-2_OB1
Motif
Other DBs
NCBI-ProteinID:
AKB80595
UniProt:
A0A0E3WV80
LinkDB
All DBs
Position
complement(18087..19541)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIESIYKKLSHVISKEDFLQHVQEKVESMGGLCDEPMAAMLVANELGFSDVGRDSVKI
ENITAESGQINFVAKVVSVFDTKEFTRNDGTIGRVGNIIVGDETGKIRITLWDNMADLIK
AEKIKVGQTLQVSGYAKQGYSGVEVNVGNNGVLAESEEEIDVAASSQKIKDIKDGMGDLN
LTGKILEISDVRTFQRKDGTSGQVGNLLLGDSTGTVRVTLWDDRTEFLNQVEYGDTIELV
NAYARENAFTQKVELQVGNRSIIRKSEKKVEYEEEFIPIEDIRADMSNINISGRVLDIGE
IRTFEKKDGSTGRVGNLLLGDSTGKIRLTLWDEKTSFLDEVDFDETIEVLHAYSRENAFS
QQIELNLGGRGIIQKSEKEIEYKEKFTDIADIIPGESYSVQGKVSEIGELKEFEREDGTE
NVVANLRLKDETGSIKITLWGEQAYVIEDLDIDSEIQIINAYAKYGLNEEIELSIGNRSR
VIML
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagatatcgaatcaatctataagaagctcagccacgttatcagtaaagaagacttc
ctgcagcatgtacaggaaaaggtcgaaagcatgggagggctttgcgatgaacccatggct
gccatgctagttgccaacgaacttgggttttcagatgtaggtcgggacagtgtgaaaatt
gaaaacattacagctgaaagcggacaaataaattttgttgcaaaagttgtgtcggttttc
gacaccaaagaatttactcgaaatgatgggacgataggtagagtcggaaatataattgtt
ggagatgaaacaggaaagatcaggataacgctctgggataacatggcagatcttataaaa
gctgaaaaaatcaaagtagggcaaactcttcaggttagcggttatgcgaagcagggatac
tcaggagtagaggtcaatgtaggaaataacggagtcctggccgagagcgaagaagaaatc
gatgtggctgccagcagccagaaaataaaggatataaaagacggtatgggagatctcaat
ttaacaggaaaaatcctggaaatttcagatgtaagaactttccagcggaaagatggcact
agcggacaggtaggaaacctgcttctcggggatagtacaggcacagtcagagtaaccctt
tgggacgacagaaccgaattcctgaaccaggtagaatacggagacactattgaactggtc
aatgcttatgcgcgagagaacgcctttactcagaaagttgaactacaggtaggaaatcga
agcataataaggaaaagtgagaaaaaagtcgagtacgaagaggaatttattccaattgag
gacatcagggctgatatgagcaatataaacatttcaggtagagtactcgatataggagaa
atccggacttttgagaaaaaagacgggtctaccggaagagttggaaatcttcttcttgga
gattccactggaaaaatcagactgactctatgggatgaaaaaaccagttttctggatgaa
gtcgattttgacgagaccatagaagtacttcatgcttactctcgggaaaatgcattcagc
cagcagatagaactcaacctgggaggccgaggaataatccagaagagtgaaaaggaaatt
gagtacaaagaaaagtttacggatattgctgatattatccctggggaaagctattcggtt
cagggtaaggtttccgaaataggggaactcaaagagtttgaaagggaagacggaaccgag
aatgtagttgcaaaccttcgattaaaggacgaaactggcagcataaagataactctctgg
ggagaacaggcttatgtgatcgaagatcttgatattgactccgaaatccagataattaat
gcttacgcgaagtatggtctgaacgaagaaattgaacttagcatcgggaatcggagcaga
gtaattatgctctaa
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