Methanosarcina barkeri 3: MSBR3_0345
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Entry
MSBR3_0345 CDS
T04533
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBR3_0345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbak03019
]
MSBR3_0345
03009 Ribosome biogenesis [BR:
mbak03009
]
MSBR3_0345
Enzymes [BR:
mbak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSBR3_0345
Messenger RNA biogenesis [BR:
mbak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSBR3_0345
Ribosome biogenesis [BR:
mbak03009
]
Prokaryotic type
rRNA helicases
MSBR3_0345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
CMS1
P-loop_SecA
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKB80923
UniProt:
A0A0E3SKB7
LinkDB
All DBs
Position
complement(471681..472889)
Genome browser
AA seq
402 aa
AA seq
DB search
MNNFKKLGLSNAVLKSIDEHGFESPTAVQEKSIPLILAGEDVIAGAATGSGKTLAFASGI
LQNSEKGKGIQALILTPTRELAEQVANSFRKFSKYDPLNIVSIYGGVGINPQIKELKNAE
VVVGTPGRLLDHISRNTIKLNKMKTLVLDEADQMFDMGFKMDVEKIIKECPQNRQTLLFS
ATVTKDIVQLSRKHMENPVRVSAESYIDPQKLNQIVYKVQDDMKLSLLVYLLQNEKSNLG
MVFCNTKRNTEKVAKNLRKSSINAVAIHGGLTQNERTRIMEKFHSGNICVLVCTDVAGRG
LDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNHVDI
KEHALPALKKIVIERPEIRLPKPVNRMNNPSRKGRKPRHKNY
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttaaaaaactaggtctcagtaatgctgttttgaaatcaatagatgaacat
ggctttgaaagccctacagcagtacaggaaaaatcaattcccctaattcttgctggggaa
gatgttatagccggagccgcaacaggttccggaaaaacactcgcatttgcttccggcata
ttacaaaattccgaaaaaggaaaaggaattcaggctttgatcctgacccctacaagagaa
ctggcggagcaggtggcaaattctttcaggaaattctcaaaatacgacccgttaaatatc
gtatctatctatggcggtgtagggatcaatccacaaattaaagaattaaagaatgccgag
gttgttgtgggaacacccggcaggctactcgatcatatcagcagaaataccatcaaactc
aataagatgaaaacccttgtccttgatgaggcagaccagatgtttgatatgggattcaaa
atggatgtagaaaaaattatcaaggaatgtcctcaaaacaggcagacccttttgttctct
gcaaccgttacaaaagatattgtccagctttcccgcaagcacatggaaaacccggttcga
gtatcagcagagtcttatatcgacccgcaaaaattgaatcagatcgtttataaagtacag
gatgacatgaaattatctctgctcgtgtatcttctacaaaatgaaaagtcaaacctcggg
atggttttctgcaacacaaaaagaaacactgaaaaagtcgcaaaaaacctgagaaaatca
agtatcaatgccgtggcaattcatggaggattgacacagaacgaacgaactcgcataatg
gaaaaattccattccgggaacatatgtgtccttgtatgcacagatgtagccggaagaggc
cttgatatacagggtgtttcccatgtttacaattatgatattcccagggagagtaaacag
tatattcacaggattggaagaactgcacgagcaggaacagaaggaaaagcgataaatatc
ctttccaaaaatgaccatgctaatttcatgagtgtgctgaaagacaatcatgtagatatt
aaggaacatgccctacccgctctgaagaagattgtaattgaaagaccggaaataagattg
ccaaagccggtaaataggatgaacaacccctccagaaaaggtcgtaaacccaggcacaaa
aactattaa
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integrated database retrieval system
