Methanosarcina barkeri 3: MSBR3_1870
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Entry
MSBR3_1870 CDS
T04533
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mbak
Methanosarcina barkeri 3
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbak03016
]
MSBR3_1870
Enzymes [BR:
mbak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
MSBR3_1870
Transfer RNA biogenesis [BR:
mbak03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
MSBR3_1870
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GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AKB82448
UniProt:
A0A0E3SMZ4
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All DBs
Position
2519598..2520143
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AA seq
181 aa
AA seq
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MIRTFIAVELNPGFAEKIRELQSRFSGFDLKFVDPELIHITLKFLGNVDESKISSLSAAL
DSITCEPFEAKIGELGVFPKPSNPRVLWLGSTGNFRALHDNIEKLLEPFKFEKDDKEFTA
HATLARVKYLKKDQKTAFINTVKELKDTEIGTMCVNKVLLKKSTLTPKGPIYETLHTVHM
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
ttgatcaggacatttatagcagtggaactaaatccaggttttgcggagaaaattcgagag
cttcagtccagattttccggttttgatctgaagtttgttgatcctgagctcattcacata
actctaaagttcctggggaatgtggacgaatcaaaaatttcctcactctctgcagctctg
gattccattacgtgtgagcctttcgaagcaaaaataggggaacttggagtttttcccaaa
ccttcgaatcccagagtcctctggcttggttcaactggaaatttcagggcgttacatgac
aacatagaaaagttgctggagccttttaaattcgaaaaagatgacaaggaatttactgcc
catgctactcttgccagggtaaaatacctcaagaaagatcagaaaacggcatttataaac
acagtaaaggaattaaaggataccgaaatcggcactatgtgcgtaaacaaagtactttta
aagaaaagtacactgactccgaaagggccaatctatgaaactctgcatactgtccacatg
gactga
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