Methanosarcina barkeri 3: MSBR3_1922
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Entry
MSBR3_1922 CDS
T04533
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBR3_1922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbak03019
]
MSBR3_1922
Messenger RNA biogenesis [BR:
mbak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSBR3_1922
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSBR3_1922
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
S1
ECR1_N_2
S1_RRP5
HypA
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB82500
UniProt:
A0A0E3WW77
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All DBs
Position
2585523..2586482
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AA seq
319 aa
AA seq
DB search
MIRIRKSKTTRKKLTGPNEGKPVAENVTQITSESRDQLKGQSRDQFKTQPREQVKNQPRE
QSRDQHKIQPRDHFRGHPRDQFKGQSRDQSKDQFRGDQGKKRRFPYQKKGSRERPDASEP
RAPYEAETPEEELEKGGFVLPGELVGTTEEFKSGEGTTVSAGDIYSTATGNVIIDRKARV
VSVRPRTLTPNILKVGDIIYGKITDVRESGAMVEVAGIEGKEDREIVNVRSGDIHVSNVR
DSYVKRLSDEFRPSDIIRARVLDTERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCP
VCNMTETRKISTEYGKGVK
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattagaaaaagtaaaactacgagaaaaaaattgactggcccgaatgaagga
aagccggttgctgaaaatgtaactcaaattacttccgaaagcagggatcaactcaaaggt
cagtcgagagatcagtttaagacccaacccagggaacaggttaaaaatcaaccaagggag
cagtccagagatcaacataagatccaaccaagagatcacttcaggggacatcccagagac
cagtttaaaggtcagtccagggatcaatcaaaggaccagttcaggggagaccagggcaag
aagcgaaggttcccgtaccagaaaaaaggttccagggaaagaccggatgcgtctgaaccc
agagctccctacgaagctgaaactccggaagaagaacttgaaaaaggaggttttgtgctt
cctggagagcttgttggaactactgaagagttcaaatccggggaaggaacaacagtgtct
gccggagatatttactctacagctaccggaaacgtaattatcgacaggaaagcaagagta
gtctcagtcaggccacgcacgctcactccgaatattcttaaagtaggggatattatctat
ggaaagataactgatgtgcgcgaatcgggggcaatggtggaagttgcaggaattgaaggc
aaagaagacagggaaattgtcaatgtgcgttcgggagacatccacgtatcgaatgtgcgg
gactcttacgttaagaggctttcagatgagttcagaccttctgatatcattcgggccaga
gttctcgacactgagagaatgcgcctgacaacagctgaagattcccttggagttgtaaaa
gcttactgttcaaattgcaaaggagaacttgtgctcgaagggaaaaagcttaaatgccca
gtctgcaatatgaccgaaactcgcaaaatctcaaccgagtatgggaaaggggtaaagtaa
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