Methanosarcina barkeri 3: MSBR3_2015
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Entry
MSBR3_2015 CDS
T04533
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03022
Basal transcription factors
mbak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSBR3_2015
09124 Replication and repair
03420 Nucleotide excision repair
MSBR3_2015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbak03021
]
MSBR3_2015
03036 Chromosome and associated proteins [BR:
mbak03036
]
MSBR3_2015
03400 DNA repair and recombination proteins [BR:
mbak03400
]
MSBR3_2015
Enzymes [BR:
mbak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSBR3_2015
Transcription machinery [BR:
mbak03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSBR3_2015
Chromosome and associated proteins [BR:
mbak03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSBR3_2015
DNA repair and recombination proteins [BR:
mbak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSBR3_2015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
ATPase
nSTAND3
HBB
TIP49
OmpH
DUF2608
Motif
Other DBs
NCBI-ProteinID:
AKB82593
UniProt:
A0A0E3SN84
LinkDB
All DBs
Position
complement(2712419..2714737)
Genome browser
AA seq
772 aa
AA seq
DB search
MMQKNGYMRYFTKQSCYPNQAEAMEKIHSALLSEKIVLFEGACGTGKTLSALAPALSVGK
KLNKVVIIVTNVHQQMVQFINEARDISRGNDIKTIVFKGKTSMCPENLDYEECRLKGENT
YDLLDLEREVSSKEKELKDAYEKYKRTKDPTLYALRTELEKELEETKKRTRALRNNSCPE
LYEVLKFEGNEFSNWLFSDVKSPEEILEYAEDRDMCGYELLKKELKNAELLICNFHHVLS
GEIFMMLLKWLERDPEDIILIFDEAHNIEASARSHSSIMLSELTIEKALSEVGETPESHN
SLMLGKETGSGGGIPLDQDYAARLYAKRLFTCLLNALRDTCDSKLKFGERNRLGKHWQDI
QISDPYERFDILKARFLREAIKEGFADEEKVLTRLREIGEFGGRLEELYAENYKKGLLTV
PKRSQIRYVADFLSSYLVLSDRQNYYPIVNVRRDFKSDKIASRIELFTCIPKNVTQPLFD
SIYSAVLMSATLRPFEMIKSTLGISREVEEISYGTTFPIERRLTLTVSIPPLFSKNRDSP
DTLENVKEALLAATIASPGNVIIYFQSYAEALRYTKLLEPELSIPIFLDETGVSAQEIRK
EFFKIGEQGGKALLITYLWGTLSEGVDFRDSRGRTVIIVGVGYPALNDRIKAVESAYDAV
FGSGEGWEFAVQVPTIRKVRQAMGRIVRSPEDYGVRILLDSRYQGSQMHKLGKFSVFNYF
PPEEKKEFIDIAPRDVGSLVEEFFAHVTSTSENEPESEASSQMNFGSLAEKL
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaagaacggatatatgcggtattttacgaaacagagctgttaccctaatcag
gcagaagcaatggagaagattcattcggctctcctgagcgaaaaaatcgtgctttttgaa
ggagcgtgtgggacaggcaagactttaagcgcacttgcccctgcattgagtgtggggaaa
aaactcaataaggtcgttattatagtcactaatgtccatcaacagatggtccaatttata
aatgaggcaagagatatttcacggggcaacgacataaaaacaatcgtttttaagggcaag
acttcgatgtgccctgaaaatctcgattacgaagaatgcaggctcaaaggggaaaatacc
tatgacctccttgaccttgaacgagaagtttcttcaaaagaaaaagagctcaaggacgcc
tatgagaaatacaaacggacaaaagaccctactctttatgccctcaggaccgagcttgaa
aaagaactcgaagaaactaagaaaagaactcgggctttaaggaacaattcctgccctgaa
ttatatgaagttctgaaatttgaaggtaatgaattttctaactggcttttttctgatgta
aagagcccggaagaaatcctggagtatgccgaagaccgggacatgtgcggatatgaactg
ctgaaaaaagaactcaaaaacgccgaacttctaatttgcaattttcatcacgtcctcagt
ggcgaaatttttatgatgctacttaaatggctcgaacgcgatcctgaagacattatcctg
atctttgacgaagctcataatattgaggcgtctgcccgttcccattcttcaataatgctc
tcggaactgactattgaaaaagccctttcggaagtaggcgaaactcccgaatctcacaat
tcacttatgttaggaaaagaaactggttccggaggtggaattcctcttgaccaggactat
gcggctagattatatgcaaaaaggctgtttacctgcctccttaacgctcttagagatacc
tgtgactcaaaattgaaattcggagaaagaaacaggcttggaaaacactggcaagatatt
cagataagtgatccctacgagcggtttgacatcctgaaagctcgctttttacgggaggcg
ataaaggaaggttttgcggatgaggaaaaagtcctgacccggttgagggagattggcgag
ttcggaggcaggctggaagaactttatgcggagaactacaaaaaagggcttcttacagtt
ccgaaacgttcccagatccgatatgttgcagactttttatcttcttacctcgtactttcg
gacaggcaaaattactatccaattgtgaacgtgcgcagagatttcaaaagcgataaaatt
gccagcaggatcgagcttttcacgtgcatccctaaaaatgtgacccagcccttgtttgat
tccatttattcggcagtgttaatgtcggctacactccggccctttgaaatgataaagtcc
acgcttggcatctcaagggaagtagaagagatttcctacggaacgacatttccaatagaa
agaaggctgaccctcacggtttccatccctccccttttttcaaagaaccgggacagcccg
gacacgcttgagaacgtgaaagaagccctgcttgcagctactattgcatcgcctggaaat
gtgattatttatttccagagctatgccgaagcacttcgctataccaaactccttgaacct
gaactttctattcccattttccttgatgaaacgggggtctcagcccaggaaatccgaaag
gaattcttcaaaataggagagcagggaggaaaagctttacttataacctatctctgggga
acattaagtgaaggcgttgacttcagagattccaggggcaggacagtgattatagtggga
gtcggataccctgctctaaatgaccgaattaaggcagttgaatctgcttatgatgctgtt
tttggctctggggaaggctgggagtttgcagtccaggtgccgacaattagaaaggtcagg
caggcaatgggaagaatagtacgttctcctgaagactacggggtaaggattctccttgat
tcgcgctaccagggctcacagatgcataaacttggcaaattttcagtttttaactatttt
ccgcctgaagaaaagaaagagttcatagacattgcacccagggacgtaggaagtctagtg
gaagaattttttgcgcatgtcacatccaccagtgaaaatgagccggagtccgaggcttca
agccagatgaatttcggaagccttgctgaaaagctttga
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integrated database retrieval system
