Methanosarcina barkeri 3: MSBR3_2650
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Entry
MSBR3_2650 CDS
T04533
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBR3_2650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbak03019
]
MSBR3_2650
03009 Ribosome biogenesis [BR:
mbak03009
]
MSBR3_2650
Enzymes [BR:
mbak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSBR3_2650
Messenger RNA biogenesis [BR:
mbak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSBR3_2650
Ribosome biogenesis [BR:
mbak03009
]
Prokaryotic type
rRNA helicases
MSBR3_2650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
AAA_30
Helicase_C_2
PFF1_TM
Motif
Other DBs
NCBI-ProteinID:
AKB83228
UniProt:
A0A0E3SP20
LinkDB
All DBs
Position
complement(3506750..3508525)
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AA seq
591 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGRVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQLRM
LKSGVDIVVGTPGRVIDHLERKSLNLEDIMYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIIKKYMKNYEHVAIEKEDLDVNLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTAQLSQKLGDRGYAADALHGDLSQNEREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSEMRKGRIPEIKDVIKAKRARVKTELEETIKTEDYGDCLEMSEKLLEEYPAEKILA
ALLKYSFKEMFDESMYAEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFIQEETGESD
LKVKDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSKGRSSKSAGESRGG
TRNGARSDSRSDSRSYSRNDSRNDSHSDSRSTNSTGYTRDTRTTKKKYSSY
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcattagggctttcagacagtacattaaaagctctt
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaggttatcccgctttttttg
aaaggagaatgtgatatcatagggcaggctcagaccggaaccgggaaaacaacggctttc
ggagctcccattatagaaaaaattccggagaaatcaggaagggtgcaggctatagtcctg
actcctactcgagaactggcaatccaggtctcagaagagctcaactccctgaaaggggac
aaaaagctgcatatagtcccgatttatggcggacagtccatgacccagcaactcagaatg
ctgaaaagtggagttgatattgtcgtgggaaccccaggaagggtcatcgatcaccttgag
cggaagagcttgaaccttgaggacatcatgtactttgtgctggacgaagccgatgaaatg
ctcaatatgggctttattgacgatattaaggaaattctaaaggcaactgggcctgataag
cgaatgcttttcttttcagctacaatgccaaagccaatccttggcatcatcaagaagtat
atgaagaactatgagcatgttgccattgagaaagaagatcttgatgtaaacctgaccgag
cagatttattttgaagtcaaggaaagcgacaaattcgaagccttgtgcaggattatcgat
atcgaagacgaattctacgggcttgtattctgcagaacaaaaaccgataccgctcagctt
tcccagaagcttggagaccggggatatgcagccgatgcccttcacggcgacctttcccag
aatgaaagagaaaagatcctgaacaggttcagaaaacaaaaaataaatattctcgtagca
accgacgttgcagcccgaggtattgatatcatggacctgacccacgtaatcaactattcc
ctgcctcaggaccctgagtcctacgtacacaggataggaagaaccggtcgagcaggaaag
cagggaactgcgattactttcgttacatctacggagtacaggcggcttacctacataaaa
aagacttcaaagtccgaaatgagaaaaggccgaattcccgagatcaaagatgtaataaaa
gccaaaagggcaagagtaaaaaccgaactcgaagagactataaaaaccgaagactatggc
gactgccttgagatgagtgaaaagcttcttgaagagtacccggccgaaaagattctggcc
gccctcctgaagtactcttttaaggaaatgttcgacgaaagcatgtatgcagagatctcc
ggaagttcatatgtcgatcggaaaggtaagaccaggcttttcatagcaatggggaaagct
gacggcatgacccctgagaagctgtgcgagtttatacaggaagaaactggagaaagcgac
ctgaaagtaaaggatgcagaaattttcccgcacttctccttcgtaactgtaccttttgcc
caggcttcagccctacttgaaatcttcaaagacaaaaagagaggtcgaaaaccctttata
gagcttgcccagaaatcaaagggccgaagttcaaagagtgctggtgaatctcgcggcggc
actcgcaatggcgctcgaagcgattctcggagtgattctcggagttactctcgaaatgac
tcacggaatgactctcacagcgattctcgaagtacgaacagcacaggttacacaagagat
acacgaactacgaagaaaaaatattcttcgtattaa
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