Methanosarcina barkeri 3: MSBR3_3115
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Entry
MSBR3_3115 CDS
T04533
Name
(GenBank) TATA-box binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSBR3_3115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mbak03000
]
MSBR3_3115
03021 Transcription machinery [BR:
mbak03021
]
MSBR3_3115
Transcription factors [BR:
mbak03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
MSBR3_3115
Transcription machinery [BR:
mbak03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
MSBR3_3115
RNA polymerase III system
TFIIIB
MSBR3_3115
RNA polymerase I system
SL1/TIF-1B
MSBR3_3115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
AKB83693
UniProt:
A0A0E3SPI1
LinkDB
All DBs
Position
4112307..4112858
Genome browser
AA seq
183 aa
AA seq
DB search
MSESSIKIENVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG
KVVCTGAKNVADVHTVIGNMARKLNSIGIKTIENPQITVQNIVASADLHTILNLNAIAIG
LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPEDCERGVEVVRQQLDNM
GLL
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatctagcatcaagatcgaaaatgtggttgcatccactaaactcgctgaagaa
ttcgacttaactgttatcgaatcccagttcgaaggagccgagtacaacaaacagaagttc
cccggactcgtttacagggtttcagatcctaaagctgcattcctggtctttacttccggt
aaggttgtctgtacaggggcaaaaaatgttgccgatgtacatacagttataggcaatatg
gcgagaaagctgaacagtatagggatcaagaccatagagaatccccagattactgtccag
aatattgttgcttcagcagacctgcatactattttgaacctgaacgcaattgcaataggg
cttggacttgaaaacattgaatatgagcccgagcagttccctggtcttgtatacagaatt
gatgaacccaaagtagttgtgcttatattcagctccggaaaactggtagttacaggtgga
aaatctcctgaagactgcgagagaggagttgaagtcgtccgccagcagctcgacaacatg
gggcttttataa
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